Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01040 ATGGCAGCAACAACAGTAAGGTATGCAGTTGTCACAGGAGCAAACAAAGGGATAGGATTTGGGATTTGCAAGCAATTGGTTTCTGATGGTATCACTGTGGTGCTAACAGCAAGGGATGAGAAAAGGGGTGTTGATGCTGTTGAAAAACTGAAAGAGTTTGGTGTGCCTGACAAAGTGGTATTTCATCAGCTTGATGTGACTGACCCTAAAAGCATCGAATCCTTTGCAAATTTCATCAAAACCCAGTTTGGGAAACTTGATATCTTGGTGAATAATGCAGGAATCAATGGAGCTACTGTCGACCGTGATGCTTTAGCTGCTGCAGGGGAAAAAATTGACAGTGTGGATTGGAGAAAATTCACACATGAAACTTATGAATCTGCAGAAGCAACCATCAGAACAAATTACTACGGAGTCAAATTAATGTGTGAAGCACTTATTCCCCTTCTAGAATTGTCAGACTCACCAAGGATTGTTAATGTTTCCTCCATCATGGGACAGTTGGAGAGAATACCAAATGAATGGGCTAGAGGAGTCCTAAGTGATGTTGACAGCTTAGCAGAAGAAAAGGTGGATGAAGTTTTGAAACAGTTTCTAGAAAGTTTTAAAGAGGGTTCCATAGAAACCAAAGGGTGGCCTCGTACTCTTTCCTCATATATACTCTCAAAAGCTGCTTTGACTGCCTACACAAGGGTTCTGGCAAAGAAGTACCCATCTTTCTGCATCAATGCTGTTTGCCCTGGGTTTGTAAAAACAGATCTCAACTACAATACTGGTTATTTTAGTGTTGATGAAGGTGCTGAACGTGTTGTAAGGTTGGCTCTGCTACCTAATGGAGGTCCTTCTGGTCTCTTCTTTTCTCGAGGTGAATTTGACGTGGAAACAATAAAAAAGTTGTTTGGACTCAACGCGCTTACGTTACGAGGAAAATTTATGAGGGGAGAATTAGTGTGA 954 0.414 MAATTVRYAVVTGANKGIGFGICKQLVSDGITVVLTARDEKRGVDAVEKLKEFGVPDKVVFHQLDVTDPKSIESFANFIKTQFGKLDILVNNAGINGATVDRDALAAAGEKIDSVDWRKFTHETYESAEATIRTNYYGVKLMCEALIPLLELSDSPRIVNVSSIMGQLERIPNEWARGVLSDVDSLAEEKVDEVLKQFLESFKEGSIETKGWPRTLSSYILSKAALTAYTRVLAKKYPSFCINAVCPGFVKTDLNYNTGYFSVDEGAERVVRLALLPNGGPSGLFFSRGEFDVETIKKLFGLNALTLRGKFMRGELV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01040 317 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 290 - -
Spst1g01040 317 FunFam (+)-neomenthol dehydrogenase 2 293 - -
Spst1g01040 317 CDD carb_red_PTCR-like_SDR_c 7 290 IPR045313 GO:0016616
Spst1g01040 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 IPR002347 -
Spst1g01040 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Spst1g01040 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
Spst1g01040 317 Pfam short chain dehydrogenase 8 168 IPR002347 -
Spst1g01040 317 Gene3D - 3 293 - -
Spst1g01040 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
Spst1g01040 317 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Spst1g01040 317 PRINTS Glucose/ribitol dehydrogenase family signature 238 255 IPR002347 -
Spst1g01040 317 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Spst1g01040 317 PRINTS Glucose/ribitol dehydrogenase family signature 150 166 IPR002347 -
Spst1g01040 317 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01040 Spst-Chr1 12788090 12798070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01040 10 259 Acyl Lipid Metabolism Gene Families AT1G24360 21.739 1.39e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01040 K15095 - gmx:106797124 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01040 1 12788090 12798070 Spst1g01040 1 12788090 12798070 ECH
Spst1g01040 1 12788090 12798070 Spst4g01786 4 57976223 57980708 PCT
Spst4g01785 4 57955552 57957241 Spst1g01040 1 12788090 12798070 PCT