Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01786 ATGTACATTTTCTCGAAGGCGTCTTCCACTTTAAATATTGTTCTTCTCCTTCTGCATCCAATTCATCCAGATTCAACAACTATGGGTATGGCAGATGCAAAAGAAAGATATGCTGTTGTGACAGGTGCAAACAAAGGGATAGGATTGGAGACTGTGAAAGGGTTGGCCTCAAATGGAGTCAAGGTGGTGCTCACAGCCAGGGATGTGAAGAGGGGCTATCGAGCTGTTGAGGAATTGGAGAAAGAGTTTGGCTTTTCTGGCCTTGTGGTGTTTCACCAGCTTGATGTCACTGATCCTGCTAGTATTGCATCTTTGGTTGAGTTTGTTAAGACCCAGTTTGGGAGACTTGATATATTGGTGAACAATGCAGGAATCAATGGGTTCAATACAGATGGCATGGTGCCATCAAAAATTAACTGGAAGGAGCTACCTCAAACTTGTGAGATGGCTAAAAAATGCCTAAGAACAAACTACTATGGTGCTAAGGAAACAACTGAGGCATTTCTTCCCCTTCTTCAATTATCCAATTTACCCATGATTGTTAATGTTTCCTCTGAAGCAGGACTTCTGAAGTACATATCAAATGGATGGGCTAGGAGGGTGCTTGATGACACTGAAAATCTCACTGAAGAGCTAATAGATGAGGTGCTGGAGGAGTACATGAAAGATCTGAAAGAAGGTTCACTAGAAAACAAAGGGTGGCCAACCTACCTGTCTGCATATATGGTCTCAAAAGCAGCAATGAATTCATACACAAGGCTTCTGGCTTATAGACACCTAAAATTGTGCATCAATTGTGTCTGTCCTGGTTTTGTTAAAACAGACATTAACAAAAACACTGGCATCTTATCTGTTGAAAATGGTGCTGCTAGTGTTGTGAGATTAGCACTCTTGCCAAATGGTTCCCCTTCTGGCCACTTCTTTACTCGACAAGAAGTGTCAAGCTTTTGA 951 0.4196 MYIFSKASSTLNIVLLLLHPIHPDSTTMGMADAKERYAVVTGANKGIGLETVKGLASNGVKVVLTARDVKRGYRAVEELEKEFGFSGLVVFHQLDVTDPASIASLVEFVKTQFGRLDILVNNAGINGFNTDGMVPSKINWKELPQTCEMAKKCLRTNYYGAKETTEAFLPLLQLSNLPMIVNVSSEAGLLKYISNGWARRVLDDTENLTEELIDEVLEEYMKDLKEGSLENKGWPTYLSAYMVSKAAMNSYTRLLAYRHLKLCINCVCPGFVKTDINKNTGILSVENGAASVVRLALLPNGSPSGHFFTRQEVSSF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01786 316 Pfam short chain dehydrogenase 37 193 IPR002347 -
Spst4g01786 316 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 36 314 - -
Spst4g01786 316 Gene3D - 27 316 - -
Spst4g01786 316 FunFam (+)-neomenthol dehydrogenase 31 316 - -
Spst4g01786 316 PRINTS Glucose/ribitol dehydrogenase family signature 37 54 IPR002347 -
Spst4g01786 316 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Spst4g01786 316 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Spst4g01786 316 PRINTS Glucose/ribitol dehydrogenase family signature 303 316 IPR002347 -
Spst4g01786 316 PRINTS Glucose/ribitol dehydrogenase family signature 260 277 IPR002347 -
Spst4g01786 316 PRINTS Glucose/ribitol dehydrogenase family signature 241 260 IPR002347 -
Spst4g01786 316 CDD carb_red_PTCR-like_SDR_c 36 316 IPR045313 GO:0016616
Spst4g01786 316 Pfam Enoyl-(Acyl carrier protein) reductase 231 280 - -
Spst4g01786 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 302 IPR036291 -
Spst4g01786 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 241 260 IPR002347 -
Spst4g01786 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Spst4g01786 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01786 Spst-Chr4 57976223 57980708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01786 34 278 Acyl Lipid Metabolism Gene Families AT1G63380 26.800 3.44e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01786 K15095 - gmx:111064653 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01786 4 57976223 57980708 Spst4g01786 4 57976223 57980708 ECH
Spst1g01040 1 12788090 12798070 Spst4g01786 4 57976223 57980708 PCT