Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00849 ATGGCTTCTAGGGACAAAAGAAGAGCTCTGGAACACACGTTGCAACAACTTCGGGATGTCACAAACTCCACTGCTCTGAACAAAGCCTCGATCATTGTAGATGCCTCAAAATATATAGAGGAGTTGAAACAAAAAGTGGAGGGACTGAACTCAGAGCTGGGGATCACAGAATCATCATCAACCTCTCAAATTGATGAACTACCTATGGTGATTGTGAAAACCCTAAAAAAGGGTTTCCTCATTAATGTGCTTTTAGAGAAGAATAGTCCCGGCATGCTCGTGTCTGTACTCGAAGCCTTCGAAGAACTTGGCCTTGATCTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCACAAGTGGTAAAGCAAGCAGTGTTGCGAGCAATCAAGAACGAGGACTAA 453 0.4437 MASRDKRRALEHTLQQLRDVTNSTALNKASIIVDASKYIEELKQKVEGLNSELGITESSSTSQIDELPMVIVKTLKKGFLINVLLEKNSPGMLVSVLEAFEELGLDLLDARVSCEDSFQLEAVGRESHKNDSVDAQVVKQAVLRAIKNED 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00849 150 ProSiteProfiles ACT domain profile. 81 150 IPR002912 -
Spst1g00849 150 Coils Coil 32 59 - -
Spst1g00849 150 Gene3D - 1 58 IPR036638 GO:0046983
Spst1g00849 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 147 - -
Spst1g00849 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 56 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00849 Spst-Chr1 10842337 10843992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00849 - - vra:106759069 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00849 1 10842337 10843992 Spst1g00849 1 10842337 10843992 ECH
Spst1g00849 1 10842337 10843992 Spst8g00545 8 5145306 5146753 ECH
Spst6g00167 6 1797767 1799180 Spst1g00849 1 10842337 10843992 ECH
Spst1g00849 1 10842337 10843992 Spst6g00167 6 1797767 1799180 ECH