Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00039 ATGTCTCACACACCACCGCAAACCCTCGAATCCGAGGAGGCACCCCCCGCCTCCGCCACCACCGCCCAAACCTCCGACTCCCACGCCGCCACGCTCCTTCACCTCTCCTTTAACCAGGACTCCGGCTGCTTCGCCGCCGCCACAGACCGCGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGCCGGGACTTCGGCCCCGGCGGCGGCGTCGGCCTTGTTCACATGCTCTTCCGATGCAACATACTCGCCTTTGTTGGCGGTGGCGTCGATCCCCGCTACCCCCCGAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTCTCCTTCCGCTCCGAGGTGAAGGGCGTCCGTCTCCGGCGCGACCGCATCGTGGTGGTCCTGGCGCACAAGATCTTCGTGTACAACTTCTCCGATCTCAAGGTGCTGCACCAAATCGAGACCTTCGCCAACCCTAAGGGTCTCTGCGACCTCTCCCACGTTTCCGCCACCATGGTCCTCGTTTGCCCCGGCTTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCTAAGAGGACCAAGTTCATCATGGCGCACGATTCCCGAATCGCGTGTTTTGCTCTCACACATGATGGCAGGTTGCTCGCCACCGCCAGCTCCAAGGGCACCCTCATCAGGCTCTTCAATACCCTCGATGGTTCATTGCTCCAAGAGGTAAGGAGGGGTGCAGACCGAGCAGAGATATACAGCCTTGCTTTCTCACCTACTGCACAGTGGCTGGCTGTCTCAAGTGACAAGGGGACCGTTCATGTTTTCAACCTCAAGGTTGATTCTGGATTGATGGGGCATGACAGATCGCATGGAACTTCTGAAGCTAATCCTGCTAATCCCACTGCAGTTTCGTCTCTTTCATTTATTAAAGGTGTGCTACCCAAGTATTTTAGCTCCGAGTGGTCTGTAGCTCAATTTCGCTTGCAAGAAGGTTTGCAATACATTGTTGCATTTGGCCATCAAAAGAATACAATTGTAATACTAGGCATGGATGGCAGCTTCTACCGATGTCAGTTTGATTCTGCGAGCGGTGGAGAGATGACCCAAATTGAATATTACAATTTCCTAAAGGCAGAAGAGACATTCTAG 1146 0.5558 MSHTPPQTLESEEAPPASATTAQTSDSHAATLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGVDPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFSDLKVLHQIETFANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTHDGRLLATASSKGTLIRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLMGHDRSHGTSEANPANPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDSASGGEMTQIEYYNFLKAEETF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00039 381 Gene3D - 32 362 IPR015943 GO:0005515
Spst10g00039 381 Pfam WD domain, G-beta repeat 244 275 IPR001680 GO:0005515
Spst10g00039 381 FunFam Autophagy-related protein 18a isoform A 30 360 - -
Spst10g00039 381 SMART WD40_4 18 56 IPR001680 GO:0005515
Spst10g00039 381 SMART WD40_4 234 275 IPR001680 GO:0005515
Spst10g00039 381 SMART WD40_4 191 231 IPR001680 GO:0005515
Spst10g00039 381 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 26 374 - -
Spst10g00039 381 MobiDBLite consensus disorder prediction 1 25 - -
Spst10g00039 381 SUPERFAMILY WD40 repeat-like 28 277 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00039 Spst-Chr10 424948 427489 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00039 K22991 - gmx:100787427 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00039 10 424948 427489 Spst10g00039 10 424948 427489 ECH
Spst1g02560 1 34156968 34160092 Spst10g00039 10 424948 427489 ECH
Spst1g03221 1 40717403 40721165 Spst10g00039 10 424948 427489 PCT