Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02560 ATGGCTACGCTTTCTGCGTGCCCTTCGCCTCCATGGCCAGACCCTAATCCCTCCACCTCCCCCAACTCTAATCCAAACCCTAATTTCCTTCCAGATAGCTCCCAAACCCTCGACTTCGAATCCCTCATGCCTCCGCAAAACCAATCGCCTCCGCCACATCTCTCCCCCGCTGCATCGCCGCCAGGATCTTCGCCGGCGACGCCGCCGTCGGTGCTTCGTCTCGCTTTCAACCAGGACCAGGCCTGCTTCTCCGCCGCCACTGACAACGGCTTCCGCATCTACAATTGCAACCCCTTCAGCGAGCAATTCCGCCGCGAGTTCGACGGCGGTGGAATCGGCCACGTTGAGATGCTCTTCCGCTGCAACATCATAGCCCTCGTGGGTGGTGGGCCCCATCCCCAGTACCCGCCCAACAAGGTCATGATCTGGGACGACCACGAGGGCTGCTGCATCGGTGACCTATCCCCCCGCGCCGTCGTCCGCGGCGTCCGGCTCCGCCGAGACCGGATAATCGTCGCCGTCGAGAAGAAGATTTTGGTCTACAATTTCCAGGACCTCAGTCTCTTGCATCAGATTGAGACCTTTCCCAACCCTAAGGGTCTCTGCGCCGTTTCGCAATTGTCGGATTCGCTCGTTCTCGCATGTCCTGGGTTGCAGAGGGGTCAGATTCGCGTGGAACACTTCGCGCAGAAGAAGACAAAGTTCATATCTGCTCACGATTCTAGAATCGCTTCTATCGCTCTCACGCTTGAAGGTCAGTTAATTGCCACCGCCAGCACGAAGGGCACGCTGATTCGAATTTTCGACACTGTTCAGGGCACGCTTCTTCAGGAAGTGAGAAGGGGTGCGAATGCTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTCTCAAGCGACAAGGGTACTGTCCATGTATTCAGCCTTAAGGTTAATTCTAGCATCGGCGAGCAAGAAAAGCCACAAAGTTCATCCAATTCAGATGCTGCCATTACCCCATCTAACTCGTCTCGCTCCTTTACTAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCGCTTGCAAGAGGGCTCTCATTACACAGTTGCATTTGGTAATGAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTACAGATGCCAATTTGATCCATTACATGGAGGGGAGATGACTCAGCTGGAGCATCATAACTTCTTAAATCCACAACCAGAAACAGCCTTGTGA 1272 0.5307 MATLSACPSPPWPDPNPSTSPNSNPNPNFLPDSSQTLDFESLMPPQNQSPPPHLSPAASPPGSSPATPPSVLRLAFNQDQACFSAATDNGFRIYNCNPFSEQFRREFDGGGIGHVEMLFRCNIIALVGGGPHPQYPPNKVMIWDDHEGCCIGDLSPRAVVRGVRLRRDRIIVAVEKKILVYNFQDLSLLHQIETFPNPKGLCAVSQLSDSLVLACPGLQRGQIRVEHFAQKKTKFISAHDSRIASIALTLEGQLIATASTKGTLIRIFDTVQGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSIGEQEKPQSSSNSDAAITPSNSSRSFTKFKGVLPKYFNSEWSVAQFRLQEGSHYTVAFGNEKNTVIILGMDGSFYRCQFDPLHGGEMTQLEHHNFLNPQPETAL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02560 423 Pfam WD domain, G-beta repeat 282 312 IPR001680 GO:0005515
Spst1g02560 423 Gene3D - 57 394 IPR015943 GO:0005515
Spst1g02560 423 MobiDBLite consensus disorder prediction 25 44 - -
Spst1g02560 423 FunFam Autophagy-related protein 18a isoform A 69 400 - -
Spst1g02560 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 68 414 - -
Spst1g02560 423 MobiDBLite consensus disorder prediction 1 70 - -
Spst1g02560 423 MobiDBLite consensus disorder prediction 322 341 - -
Spst1g02560 423 SUPERFAMILY WD40 repeat-like 67 327 IPR036322 GO:0005515
Spst1g02560 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Spst1g02560 423 SMART WD40_4 61 95 IPR001680 GO:0005515
Spst1g02560 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Spst1g02560 423 MobiDBLite consensus disorder prediction 8 24 - -
Spst1g02560 423 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02560 Spst-Chr1 34156968 34160092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02560 K22991 - gmx:100781692 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02560 1 34156968 34160092 Spst1g02560 1 34156968 34160092 ECH
Spst1g02560 1 34156968 34160092 Spst10g00039 10 424948 427489 ECH