Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06401 ATGTCTCATACCCCACAAACCCTAATGCCCCTCGATTCCGACGAAGCACCCCCGAACCAAATACCCCCTTCCCCCAACCCGCCTCCGAATTCCGCCCCCACCCTCCTCCACCTCTCCTTCAACCAAGACTCCGGCTGCTTCGCCGCCGGCACCGACCACGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATTTTCCGGCGTGACTTCGGTCCCGGCGGAGGAATCGGATTGGTCCACATGCTCTTCCGATGCAACATACTCGCCTTCGTCGGCGGCGGGTCGGACCCTCGCTACCCGGTCAACAAGGTGATGATTTGGGACGATCACCAGTCACGGTGCATCGGAGAGCTTTCGTTTCGATCGGAGGTGAAAGGGGTTCGTCTTCGAAGGGACCGAATCGTTGTGGTTTTGGCGCACAAGATATTCGTCTACAATTTCGCTGATCTCAAGGTTCTGCATCAAATTGAAACAATTGCGAACCCTAAGGGGCTCTGCGAGGTTTCCCATGTTTCGGGGACTATGGTTTTGGTGTGCCCCGGCTTGCAGAAGGGTCAGGTTAGGGTAGAGCATTACGCGTCAAAGAGGACCAAGTTCATCATGGCACACGATTCCAGAATCGCGTGCTTCGCTCTCACACAGGATGGTCGTTTGCTTGCAACTGCTAGCTCCAAGGGGACTCTAGTTAGGGTTTATAATACCTTGGATGGTTCTTTACTCCAAGAGGTACGGAGAGGTGCTGACCGAGCAGAGATATATAGTCTTGCCTTCTCTCCTACAGCACAGTGGCTAGCTGTCTCCAGTGACAAGGGAACCGTTCATGTGTTCAACCTGAAGGTTGATTCAGGACTTTTGGGGCATGATAGATCACATAGTACATCTGAGTCTAGTCCTGCTAGTCCAACAGCAGCTTCATCTCTTTCATTTATTAAAGGTTTAGGTGTGTTACCAAAGTATTTTAGCTCAGAGTGGTCTGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAATATGTTGTTGCATTCGGCCATCAAAAGAATACAATTGTGATACTTGGCATGGATGGCAGGTATTTCAGTAATGGATCATGTCTTTTTGTTGCATTCAGATTTTTTTTTTGGTACAATTGTGCCGTGCTGCTCTCCATAGTTTGTCATTGCCTTTTTATTTTTTTGGGTGTTGCTTTGAGATATTAG 1197 0.4987 MSHTPQTLMPLDSDEAPPNQIPPSPNPPPNSAPTLLHLSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDFGPGGGIGLVHMLFRCNILAFVGGGSDPRYPVNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGRLLATASSKGTLVRVYNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHSTSESSPASPTAASSLSFIKGLGVLPKYFSSEWSVAQFRLQEGLQYVVAFGHQKNTIVILGMDGRYFSNGSCLFVAFRFFFWYNCAVLLSIVCHCLFIFLGVALRY. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06401 398 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 31 360 - -
Seca8g06401 398 MobiDBLite consensus disorder prediction 1 33 - -
Seca8g06401 398 Pfam WD domain, G-beta repeat 247 278 IPR001680 GO:0005515
Seca8g06401 398 SUPERFAMILY WD40 repeat-like 28 280 IPR036322 GO:0005515
Seca8g06401 398 FunFam Autophagy-related protein 18a isoform A 33 366 - -
Seca8g06401 398 Gene3D - 32 356 IPR015943 GO:0005515
Seca8g06401 398 SMART WD40_4 194 234 IPR001680 GO:0005515
Seca8g06401 398 SMART WD40_4 237 278 IPR001680 GO:0005515
Seca8g06401 398 SMART WD40_4 25 59 IPR001680 GO:0005515
Seca8g06401 398 MobiDBLite consensus disorder prediction 16 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06401 Seca-Chr8 158308466 158311188 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06401 K22991 - gmx:100787427 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06401 8 158308466 158311188 Seca8g06401 8 158308466 158311188 ECH
Seca8g06769 8 162510351 162514190 Seca8g06401 8 158308466 158311188 ECH
Seca8g05803 8 150709543 150710694 Seca8g06401 8 158308466 158311188 PCT