Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06769 ATGCTGCCCCAATCTCAAACCTCTTCGCCGGAAAAACCTCCCTCCTTGCTCCTCCGTCTTTCCTTCAACCAAGACCAAACCTGCTTTGCCGCCGCCACCGACACTGGCTTCCGCGTCTACAGCTGCCACCCCTTCCAGGAGCTCTTCCGTCGAGATTTCGCCTGCTGCGGGATCGCCCACGTCGAGATGCTTTTCCGCTGCAACATACTGGCACTCGTCGGCGGCGGGTCCCTCCCTCAGTTCCCTGTCAACAAGGTCATGCTTTGGGACGATCATCAAGGCAGGTGCTTCGGCGAGCTTTCCTTCCGATCCGCCGTTCGTGGCGTCCGTCTCCGGCGAGACCGGATTGTCGTCGCCCTGGAGATGAAGGTTTTCGTGTACAATTGCGTTGACTTCAAGCTTCTGCATCAATTCGAGACAGTTCCGAACCCTAAGGGGATCTGCGCGGTTTCGCAGGTGGCCGATTCGGTGGTGCTGGCGTGCCCCGGCTTGTACAATGGTCAGGTACGGGTGGAGAACTTTGCGCAGAAGAAGAGCAATTTCGTTTCGGCTCATGCTTCGGGCATAGGGTGTTTGGCTCTCACGCTTGATGGCAAGTTCCTCGCCACCGCCAGCACTAGGGGCACACTCATTCGGGTTTTCAATTCCATGAATGGGACTCCCCTTCAGGAAGTAAGAAGGGGTGCAAATGCAGCAGAGATCTGCAGTTTGGCATTCTCTTCAACTGCTCAGTGGTTAGCAGTCTCTAGTGACAAGGGTACTGTCCATGTTTTCGGCCTTAAGATTAATTCTAGTGACATGGAGTCCAGTTCTGATGTTTCCATTACACGATCTAGCTTGTCTCTCTCATTGATTAAATTTAAAGGTAAAATTTCTTCATTTGCAGGAGTGTTGCCAAAGTATTTCAATTCAGAGTGGTCATTTGCTCAGTTTCACTTGCGTGAGGGCTCCCATTACACTGTTGCATTTGGTCACCAAAAGAACACAGTCATAATTCTTGGCATGGATGGAAGCTTTTATCGATGTCAGTTTGATCCAGTGCATGGTGGAGAGATGACTCAGCTTGAATCTCATAACTTTCTAAAGCCCGAAATAGCCTCATGA 1104 0.5136 MLPQSQTSSPEKPPSLLLRLSFNQDQTCFAAATDTGFRVYSCHPFQELFRRDFACCGIAHVEMLFRCNILALVGGGSLPQFPVNKVMLWDDHQGRCFGELSFRSAVRGVRLRRDRIVVALEMKVFVYNCVDFKLLHQFETVPNPKGICAVSQVADSVVLACPGLYNGQVRVENFAQKKSNFVSAHASGIGCLALTLDGKFLATASTRGTLIRVFNSMNGTPLQEVRRGANAAEICSLAFSSTAQWLAVSSDKGTVHVFGLKINSSDMESSSDVSITRSSLSLSLIKFKGKISSFAGVLPKYFNSEWSFAQFHLREGSHYTVAFGHQKNTVIILGMDGSFYRCQFDPVHGGEMTQLESHNFLKPEIAS. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06769 367 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 16 359 - -
Seca8g06769 367 SMART WD40_4 218 259 IPR001680 GO:0005515
Seca8g06769 367 SMART WD40_4 175 215 IPR001680 GO:0005515
Seca8g06769 367 Pfam WD domain, G-beta repeat 228 258 IPR001680 GO:0005515
Seca8g06769 367 SUPERFAMILY WD40 repeat-like 12 264 IPR036322 GO:0005515
Seca8g06769 367 FunFam Autophagy-related protein 18a isoform A 14 346 - -
Seca8g06769 367 Gene3D - 16 349 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06769 Seca-Chr8 162510351 162514190 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06769 K22991 - gmx:100781692 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06769 8 162510351 162514190 Seca8g06769 8 162510351 162514190 ECH
Seca8g06769 8 162510351 162514190 Seca8g06401 8 158308466 158311188 ECH