Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05233 ATGGATGCGTTTCAAGGGGCCAGGGATGATGTTGTCTCGCAAGTTGGGTTGGTTTGGAGCCAAATCAAAGAGCCACTGATCGTGCCATTGCTGAGAGTGGCAGTGTTTCTGTGCCTTGTCATGTCTTTGATGATGTTCATTGAGAGGGTGTACATGGGCATTGTCATTTCTTTGGTGAAACTGTTTGGTCGAAAACCAGAGAAGCGTTACAAATGGGAGCCTATGAAGGACGATGTAGAATTGGGAAACTTTTCTTACCCAATGGTCCTTGTCCAAGTCCCAATGTACAACGAAAGAGAGGTTTATCAGCTATCCATTGGTGCTGCATGTGGACTTTCTTGGCCTTCAGATAGGATCATCATACAAATTCTTGACGATTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTAGAATGCAATAGATGGGCAAGCAAAGGGGTGAACATAAAGTATGAAGTTAGAGACAACAGAAATGGGTACAAAGCAGGGGCTCTTAAGGAAGGAATGAAGCGAAGCTACGTGAACCAATGTGATTATGTTGCCATCTTTGATGCTGATTTTAAACCTGAGCCTGATTATCTCTGGCGCACTATCCCATTCCTTGTTAACAATCCTGAACTTGCTCTTGTTCAGGCGCGCTGGAAGTTTGTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTCCACTTATGCCTTTTTTGGCTTCAACGGGACTGCTGGTGTATGGAGAATTTCGGCGCTGAATGAAGCTGGTGGATGGAAGGATAGGACCACAGTGGAAGATATGGACCTGGCTGTAAGAGCCAGTCTCAAAGGATGGAAATTCTTATACCTGGCCAATTTAAAGGTTAAAAATGAATTACCAAGCACTCTAAAGGCCTACCGCTACCAACAGCACAGGTGGTCTTGTGGGCCAGCCAATCTTTTCAAGAAAATGGTCATGGAGATTATTAGAAACAAGAAAGTGTCTTTGTGGAAGAAGATACATGTGATTTACAGCTTTTTCTTTGTTCGGAAGGTTGTGGCCCACATCAACACTTTTGTGTTCTATTGCATTGTGTTACCTGCAACAGTTGTGGTGCCTGAGGTTGCAGTCCCCAAGTGGGGATCTGTGTATATCCCCTCCATCATCACCCTTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTACTAGTCTTTTGGATTCTCTTTGAGAATACCATGTCTCTACATCGAACAAAGGCTACAATCATTGGTCTATTAGAGGCTAGTCGAGTGAATGAATGGATTGTCACTGAAAAGCTTGGAGATGCTCTCAAGGGTAAAGGTAGCAGTAAAGCACCCAAGAAGCCACGATTTAGAATTGGAGACAGGATTCACATGTTAGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATCTTATGTTCGGGAAAAACCACTTCTTCATATTCCTATATATCCAAGCATTTGCTTTCTTCATCATGGCATTTGGATACGTTGGCACTTTTGTTCCCAACTCCTAG 1572 0.437 MDAFQGARDDVVSQVGLVWSQIKEPLIVPLLRVAVFLCLVMSLMMFIERVYMGIVISLVKLFGRKPEKRYKWEPMKDDVELGNFSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKELVQLECNRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVNQCDYVAIFDADFKPEPDYLWRTIPFLVNNPELALVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLANLKVKNELPSTLKAYRYQQHRWSCGPANLFKKMVMEIIRNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVVVPEVAVPKWGSVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKGKGSSKAPKKPRFRIGDRIHMLELLVGFYLFFCGCYDLMFGKNHFFIFLYIQAFAFFIMAFGYVGTFVPNS. 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05233 523 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 13 518 - -
Seca8g05233 523 Pfam Glycosyl transferase family group 2 180 377 IPR001173 -
Seca8g05233 523 FunFam Glucomannan 4-beta-mannosyltransferase 9 78 306 - -
Seca8g05233 523 CDD CESA_CaSu_A2 87 323 - -
Seca8g05233 523 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 302 IPR029044 -
Seca8g05233 523 SUPERFAMILY Nucleotide-diphospho-sugar transferases 85 363 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05233 Seca-Chr8 142735072 142740521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05233 2 522 Miscellaneous Gene Families AT5G03760 79.119 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05233 K13680 - gmx:100810016 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05233 8 142735072 142740521 Seca4g09315 4 220937613 220943983 ECH
Seca8g05233 8 142735072 142740521 Seca8g05233 8 142735072 142740521 ECH
Seca8g05233 8 142735072 142740521 Seca2g04755 2 133837144 133843428 PCT