Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04755 ATGGATCGCCTTTATTCAACTACTACTATCCCTGATGCATTTCAAGGAGCCAAAGATGACATTACCATGCAGTTTGCTTTGATTTGGAATCAAATCAAAGCGCCATTGATTGTCCCATTACTGAGAATAACAGTAGTTCTGTGCTTGATCATGTCAGTGATGATGTTCATTGAGAGGGTTTACATGGGCATTGTCATTAGTCTGGTGAAGTTATTTGGCAGAAAACCAGAGAAACGTTACAAATGGGAGCCAATGAAGGATGATATAGAGTTGGGAAACTCTTCTTACCCAATGGTTCTCGTTCAAATCCCCATGTACAACGAAAGAGAGGTTTATCAGCTCTCAATTGGAGCAGCATGTGGTCTTTCTTGGCCTTCGGATAGGATCATCATACAAGTTCTTGATGATTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTGGAATGCCAAAGATGGGCAAGCAAAGGTGTGAACATAAAGTATGAGGTTAGGGACAATAGGAATGGATACAAAGCAGGGGCTCTCAAAGAAGGCATGAAACGTAGCTACGTGAAACAATGCGATTTGGTTGCTATCTTTGATGCTGATTTTCAGCCAGAGCCTGATTTCTTGTGGCGCACCGTTCCATTCCTTGTGCACAATCCTGAACTTGGCCTCATTCAGGCTCGCTGGAAATTTGTGAATTCCGATGAATGTTTGATGACCAGAATGCAAGAGATGTCACTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTATGCTTTCTTTGGCTTCAATGGGACTGCGGGAGTATGGAGAATTTCGGCGCTGAATGAGGCTGGTGGGTGGAAGGATAGGACCACAGTGGAAGATATGGACCTGGCTGTCCGAGCCAGTCTCAAAGGATGGAAATTCTTATACTTGTCCAACTTGAAGGTTAAAAATGAATTGCCAAGTACTTTTAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGGCCAGCCAATCTTTTCAGGAAAATGGTTATGGAGATTGTAAGAAACAAGAAAGTGTCATTGTGGAAGAAGATCCATGTGATTTACAGCTTCTTCTTTGTTCGGAAGGTTATAGCACACATCAACACGTTTGTGTTTTATTGCATTGTATTGCCTGCAACAGTTTTGGTGCCTGAGGTTGCTGTCCCTAAGTGGGGAGCTGTCTATATCCCTTCTGTCATTACCATCCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTATTGGTCTTTTGGATTCTATTTGAGAATGTCATGTCTCTGCATAGAACAAAAGCAACTATTATTGGTCTACTAGAGGCTAGTCGTGTGAATGAATGGATTGTCACTGAAAAACTTGGAGATGCTCTCAAGGCTAAAACAGGAGGTAAAACACCTAAGAAGCCTCGATTCAGGATTGGAGACAGGATTCACTTGTTAGAGCTTGGTGTTGGATTCTACCTCTTCTTCTGTGGCTGGTACGATTTTATGTTTGGGAAAAACCACTTCTTCATCTACCTCTTTATCCAATCATTTGCCTTCTTTGTGATGGCATTTGGATATGTTGGCACCTTTGTTCCCAACTCCTAG 1602 0.4288 MDRLYSTTTIPDAFQGAKDDITMQFALIWNQIKAPLIVPLLRITVVLCLIMSVMMFIERVYMGIVISLVKLFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQIPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKELVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYVKQCDLVAIFDADFQPEPDFLWRTVPFLVHNPELGLIQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVRNKKVSLWKKIHVIYSFFFVRKVIAHINTFVFYCIVLPATVLVPEVAVPKWGAVYIPSVITILNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEASRVNEWIVTEKLGDALKAKTGGKTPKKPRFRIGDRIHLLELGVGFYLFFCGWYDFMFGKNHFFIYLFIQSFAFFVMAFGYVGTFVPNS. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04755 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 375 IPR029044 -
Seca2g04755 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Seca2g04755 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 312 IPR029044 -
Seca2g04755 533 Pfam Glycosyltransferase like family 2 98 332 - -
Seca2g04755 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 20 528 - -
Seca2g04755 533 CDD CESA_CaSu_A2 97 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04755 Seca-Chr2 133837144 133843428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04755 6 532 Miscellaneous Gene Families AT5G03760 82.008 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04755 K13680 - gmx:100810016 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04755 2 133837144 133843428 Seca4g09315 4 220937613 220943983 ECH
Seca2g04755 2 133837144 133843428 Seca2g04755 2 133837144 133843428 ECH
Seca8g05233 8 142735072 142740521 Seca2g04755 2 133837144 133843428 PCT