Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05007 ATGGTGGATGAGCTGGAAACAGGGGTTGATTTTGAGAAATTCACTTGGAGAATTGAAGATTTCTCCAAAAAGAATGCCATGAAATTACGCTCCAGGACTTTCAAAATCCGTGGTTGTTCATGGAGGATCCTTGTGTATCCACTGAGGAAGGATGTGAACCATTTTTCATTGTATTTGATGGTTGCTGATTCTTTACCACCATATGGATGGAGCAGAAACACTTTTTTCAAGTTAGCTCTAATTAATCAGGTGGATAAGAAGAAGTCCGTTATAAAAGAGACTCAGCAAAAGTTTAAAGGAGGATATCGTAGCTGGGGTTCATTTTTCCTGAATCTGAATGACTTGTATGACCATAAAAAAGGGTATCTTTTGAGGGACACATGCATCATTGAAGCTCACATTTGTGTCTCTGATTTTCCACCTAAGATAATTCAAGACATCAATTACCCCTTAAATCCAAATTCATCAACTCCAACCCCTGATTCTAGATTAGGTGATCAAGCAACAGATCAATCCTCTGATGAGAGGGATACAATTAGTCCTAGAACCTCAGGGTCTAGTCCAAGAGAAGGGGAAATTCAAGGTTCAGATTTGACACTAAGAGAGTTAATAGACTTGGAGAGTTTAAGACCAGAAGAAGAAGCTTTCATTCCACTGTTGGAGGAGGTTTGTATATGGCGTCCTTCACTGATTCAAAACCAAATGAGAAGAAGTCGTTGGTTCAGACAATGGACTTTCACATCTTTAGGACAAGTTCTGCATTTCCTTAAGATGAAAAAGGTGAAGGATATAAGTGAAGAGGATTGCAAGAATCTTCAGAGTTTGTGGGAGGAACTTGTCAAGTCCTCAGGATTTGACTTGGCTTGGTTGGAGCCATATGTTCAATCTGCATTGGATGTGAAAGCTCATTTGGAAAGAGCACAGAGACTGAAGAAATTAAAGGACAATGTGGTTGCTTTGGAGATTAAAATGAAGAAGCTGAGGGGAGAACTTGCTGCTGCTGAAGCAGAGTTTGAGGTGGCAAGGAAAGGCTTGTCACAAGTCAGAAAAGGTTTCCAAGAAATGAATGTAAATGCTCCAATAGGTTATGCTATGTTTTAG 1101 0.3969 MVDELETGVDFEKFTWRIEDFSKKNAMKLRSRTFKIRGCSWRILVYPLRKDVNHFSLYLMVADSLPPYGWSRNTFFKLALINQVDKKKSVIKETQQKFKGGYRSWGSFFLNLNDLYDHKKGYLLRDTCIIEAHICVSDFPPKIIQDINYPLNPNSSTPTPDSRLGDQATDQSSDERDTISPRTSGSSPREGEIQGSDLTLRELIDLESLRPEEEAFIPLLEEVCIWRPSLIQNQMRRSRWFRQWTFTSLGQVLHFLKMKKVKDISEEDCKNLQSLWEELVKSSGFDLAWLEPYVQSALDVKAHLERAQRLKKLKDNVVALEIKMKKLRGELAAAEAEFEVARKGLSQVRKGFQEMNVNAPIGYAMF. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05007 366 CDD MATH 13 134 IPR002083 GO:0005515
Seca8g05007 366 SMART math_3 13 115 IPR002083 GO:0005515
Seca8g05007 366 Pfam MATH domain 19 134 IPR002083 GO:0005515
Seca8g05007 366 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 12 339 - -
Seca8g05007 366 MobiDBLite consensus disorder prediction 178 193 - -
Seca8g05007 366 Coils Coil 310 344 - -
Seca8g05007 366 ProSiteProfiles MATH/TRAF domain profile. 11 134 IPR002083 GO:0005515
Seca8g05007 366 MobiDBLite consensus disorder prediction 150 193 - -
Seca8g05007 366 SUPERFAMILY TRAF domain-like 13 138 - -
Seca8g05007 366 MobiDBLite consensus disorder prediction 150 167 - -
Seca8g05007 366 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 144 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05007 Seca-Chr8 139415130 139417111 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05007 - - gmx:100797919 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05007 8 139415130 139417111 Seca8g05007 8 139415130 139417111 ECH
Seca8g05007 8 139415130 139417111 Seca6g03367 6 100728056 100752961 ECH
Seca2g04956 2 136184359 136186873 Seca8g05007 8 139415130 139417111 PCT