Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04956 ATGGAGAATGAGCAGGTGAAGGGTATTGCTTTGGAGAAATTCACATGGAAGATTGAAGCTTTCTCCAAAATGAGCTTTAAGAAACTGTCCTCTAAGGCTTTCAAAATTGGTGGTCATAGATGGAAGATTGTTATATATCCTAAGGGGACTAATGAGGAGCATTTATCCTTGTATATGAAGATTGCTGATACCCTACCACCATATGGATGGAGCAGATTTGTATATTTCAGGTTGGCTCTTATTAATCAGGTTGATAGCAAGAAGTCAATTGTAAAGGAAACCCAGCAGAAGTTCAATGCTGGAAATAGTGGTTGGGGTTCTCCATCATTCATTCCTCTAAGTGAATTCCATGACCCTAGTCAAGGTTATCTTGTGAATGATACATGTATCATTGAAGCCCAAATTTCAGTGTCTAAGGTTGCATTTAACATAATAAAAAAATCTGATGGTGACCAACCTAAGCTAACACAAGATCAACTCAAAGAGCTCCAAAAGATACCTTCAGATGTGACACTAAGTCCCACAAGTACCCATGATTCTAAAGATGATCAACTAAGTGAAATAGAAGTACAATTCTTCCAATCAGAAGACAAAGGAATGGGACCATCAGATATGACTCCAAGTCCTAAACAAGTGCAATTTGTTCCTAGTGCTCCTCCTATGTATCCACCTTTATTTAATGAATCTGAGGAAGCTGTGCTCTTAACTCTAAGTGACCTCATAGATTTGAAGAATTTAGAGCCAGAAGAAGCAATTTTTATTCCACTATGGGAGGAGGTATGTTCATGGCATCCTTCACTAGTAGAGAACCAGAAAAGAAGAAGTCCTAGGTTCATATTGTGGGCATTCACAGCTTTGGGGAGAGTTCTACATTTCCTTAAGACTAAGAAGATTAGGGACATGGGTGAGGACAATTGCATGCACCTTCAAGTTCTATGGGAAGAGCTTCAACCCTTTGGATTTGACTTGACATGGTTGGAGCCTCATGTTGAATCAGCATTGGGTGCAAAAGGTTATTGGGAAAGAGCAGAACACTTGAAAAAACTAAGGGTCAATGTAGCAGCTCTAGAGATTGAACTGAGGAGGTTAAAGGCAAAACTGGCTGTTGCAGAATTGGACCTTGAGGTTGCAAGGAGAGATTTGGCAGAGGTAGAGAAAGGTTTTGAAGAAAGGGACATGAATGCACAACTTGGTTATGGAATGCCTTAG 1209 0.3987 MENEQVKGIALEKFTWKIEAFSKMSFKKLSSKAFKIGGHRWKIVIYPKGTNEEHLSLYMKIADTLPPYGWSRFVYFRLALINQVDSKKSIVKETQQKFNAGNSGWGSPSFIPLSEFHDPSQGYLVNDTCIIEAQISVSKVAFNIIKKSDGDQPKLTQDQLKELQKIPSDVTLSPTSTHDSKDDQLSEIEVQFFQSEDKGMGPSDMTPSPKQVQFVPSAPPMYPPLFNESEEAVLLTLSDLIDLKNLEPEEAIFIPLWEEVCSWHPSLVENQKRRSPRFILWAFTALGRVLHFLKTKKIRDMGEDNCMHLQVLWEELQPFGFDLTWLEPHVESALGAKGYWERAEHLKKLRVNVAALEIELRRLKAKLAVAELDLEVARRDLAEVEKGFEERDMNAQLGYGMP. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04956 402 CDD MATH 13 135 IPR002083 GO:0005515
Seca2g04956 402 Pfam MATH domain 19 137 IPR002083 GO:0005515
Seca2g04956 402 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 11 151 IPR008974 GO:0005515
Seca2g04956 402 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 374 - -
Seca2g04956 402 Coils Coil 346 387 - -
Seca2g04956 402 SMART math_3 16 116 IPR002083 GO:0005515
Seca2g04956 402 ProSiteProfiles MATH/TRAF domain profile. 11 135 IPR002083 GO:0005515
Seca2g04956 402 SUPERFAMILY TRAF domain-like 13 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04956 Seca-Chr2 136184359 136186873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04956 - - gmx:102668441 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04956 2 136184359 136186873 Seca8g05007 8 139415130 139417111 PCT