Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03367 ATGACCGTGATGATGTCTGCTCCCATTGACCAGCAAGAGGACGAGGAGGTGCTCGTGCCACACGCGGATTTACCCGAGAACAATCACCAACCCATGGAAGTTGTGGCTCAACCTGAAACTGCCAATGCTGTGGAGAGCCAGCCAGTTGCGGATCCTCCGTCATCCAGATTCACATGGAGAATTGATAACTTTTCTAGGCTGAATACAAAGAAGCTCTATTCGGAAATATTCGTTGTTGGTGGTTATAAATGGCGTGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTGTTAATCAAATCCATAACAAGTATTCTGTGAGAAAAGACACACAACACCAATTTAATGCACGAGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTCGTGAATGATACCCTTATAGTTGAAGCTGAGGTTCTTGTTCGTAGGATTGTTGATTACTGGAATTATGATTCAAAGAAGGAGACTGGTTATGTTGGGCTTAAGAATCAAGGAGCCACATGCTATATGAATTCTCTACTCCAGACACTGTACCATATTCCATATTTCAGAAAGGCTGTGTACCATATGCCAACAACCGAGAATGATATGCCCTCTGGAAGCATCCCGTTGGCTCTACAAAGTTTATTCTACAAGCTCCAATATAGTGACACCAGTGTTGCAACAAAGGAACTGACAAAGTCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTAAATCGGGTCCTCTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCATCATATGAACTACATAGAGTGCATCAATGTGGACTTCAAATCAACTAGAAAGGAATCGTTTTATGACCTTCAGCTTGATGTCAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGGGATAACAAATATCATGCTGAACAGTATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTTATTGATTTTCCTCCTGTCCTTCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTCAAGATCAATGACCGTTATGAGTTTCCCTTACAACTTGATCTTGATCGTGAAGATGGAAAATATTTATCACCTGAGGCTGATAGGAGCGTCCGCAATCTTTACACACTTCACAGTGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGACATTATTATGCTTTTATTAGGCCAACTCTCTCCGAACAGTGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGACAACAAACGGGCATTAGAGGAACAATATGGCGGTGAGGAGGAGTTACCACAGACAAATCCTGGATTCAATAACACGCCATTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGGGAAAGTGACAAGGACAAAATCATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCTGAGGCCCATCTTTATACTATTATAAAGGTGGCAAGAGATGAAGATCTTGCAGAGCAGATTGGAAAGGATATATACTTTGATCTTGTAGACCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAACAGATGTCTTTTAACCTTTTCAAGGAAGAGGTTGCAAAAGAGTTTGGTATACCGGTTCAATTTCAGCGCTTTTGGCTATGGGCAAAACGGCAAAACCATACCTATCGGCCTAATAGACCATTGACACACATTGAGGAAACACAATCTGTTGGACAATTAAGAGAAGTGTCAAACAAGGTTCACAATGCAGAACTGAAGTTATTTTTGGAAGTGGAGCTGGGGATGGATTTACGTCCCATTGCACCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGCTATATGATCCTGATAAAGAGGAGCTGCGTTTTGTCGGAAGGCTCTTTGTGAAGTGTACTGGCAAGCCATCAGAAATCTTAACGAAGCTAAATGAATTGGCCGGTTATGATCCTGAGGAAGATATTGCACTTTATGAGGAAATAAAGTTTGAACCAAATGTCATGTGTGAACCTATTGACAAGAAAGTAACATTTCGAGCAAGCCAGCTGGAGGATGGAGATATTGTGTGCTTTCAGAAAGCTCCCTCTATGGATAGTGAGGAACATGTCCGCTATCCAGATGTGCCCTCATATTTAGAATATGTGCACAATCGCCAGGTGGTTCACTTTCATCCTCTGGATAGACCCAAGGAAGATGATTTTTTCTTGGAGATGTCAAGGCTTTATACATATGATGATGTGGTGGAGAGAGTAGCTCAACAACTTGGTTTGGATGATCCGTCCAAGATACGGCTTACCCCACACAACTGTTACTCTCAACAACCAAAACCCCAGCCTATTAAGTACCGAGGGGTGGAACATTTGTCTGATATGCTAGTTCATTACAATCAGACCTCAGATATATTATACTATGAAGTGCTTGACATCCCTCTACCAGAATTACAAGGTTTGAAAACTCTGAAAGTTGCATTTCATCATGCCACCAAGGATGAAGTAGTTATTCATACTATCAGACTCCCAAAGCAGAGCACTGTCGGGGATGTCCTTGATGATCTTAAAACAAAGGTGGAATTGTCTCATCCTAATGCTGAGCTTCGGTTGCTTGAAGTCTTCTATCATAAGATATACAAGGTCTTCCCTCCAAATGAAAAGATTGAAAACATTAATGATCAATACTGGACATTGCGAGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTCGGTCAACATGATCGTCTAATTCATGTGTACCATTTTACTAAAGACACAGCTCAAAACCAAATGCAAATTCAAAACTTTGGGGAACCTTTTTTCTTGGTTATACACGAAGGTGAAACACTATCTGAAATCAAAGTGCGAATACAGAAGAAACTTCAGGTTCCTGATGAAGAGTTTTGCAAGTGGAAGTTTGCTTTTCTATCACTAGGGCGTCCTGAGTATCTTCAGGATTCCGACATTGTATCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTAGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGAATCGCCACACGTTTGAGAAGCCAGTAAAGATTTATAATTAG 3357 0.406 MTVMMSAPIDQQEDEEVLVPHADLPENNHQPMEVVAQPETANAVESQPVADPPSSRFTWRIDNFSRLNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIVEAEVLVRRIVDYWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDREDGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLAEQIGKDIYFDLVDHDKVRSFRVQKQMSFNLFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHIEETQSVGQLREVSNKVHNAELKLFLEVELGMDLRPIAPPDKTKDDILLFFKLYDPDKEELRFVGRLFVKCTGKPSEILTKLNELAGYDPEEDIALYEEIKFEPNVMCEPIDKKVTFRASQLEDGDIVCFQKAPSMDSEEHVRYPDVPSYLEYVHNRQVVHFHPLDRPKEDDFFLEMSRLYTYDDVVERVAQQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSHPNAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGQHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLSEIKVRIQKKLQVPDEEFCKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN. 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03367 1118 SMART math_3 56 160 IPR002083 GO:0005515
Seca6g03367 1118 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 523 IPR028889 -
Seca6g03367 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 52 195 - -
Seca6g03367 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 802 899 - -
Seca6g03367 1118 SUPERFAMILY Cysteine proteinases 194 551 IPR038765 -
Seca6g03367 1118 Gene3D - 684 801 - -
Seca6g03367 1118 Pfam Ubiquitin-specific protease C-terminal 886 1096 IPR029346 -
Seca6g03367 1118 Gene3D Cysteine proteinases 196 524 - -
Seca6g03367 1118 SUPERFAMILY TRAF domain-like 52 185 - -
Seca6g03367 1118 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 624 876 IPR024729 -
Seca6g03367 1118 ProSiteProfiles MATH/TRAF domain profile. 54 179 IPR002083 GO:0005515
Seca6g03367 1118 Pfam Ubiquitin carboxyl-terminal hydrolase 199 520 IPR001394 GO:0004843|GO:0016579
Seca6g03367 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Seca6g03367 1118 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 53 195 IPR008974 GO:0005515
Seca6g03367 1118 Gene3D - 802 899 - -
Seca6g03367 1118 Coils Coil 532 563 - -
Seca6g03367 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 439 456 IPR018200 GO:0004843|GO:0006511
Seca6g03367 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 44 526 - -
Seca6g03367 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 196 524 - -
Seca6g03367 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 684 801 - -
Seca6g03367 1118 CDD MATH 56 179 IPR002083 GO:0005515
Seca6g03367 1118 Pfam MATH domain 61 180 IPR002083 GO:0005515
Seca6g03367 1118 CDD peptidase_C19C 197 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03367 Seca-Chr6 100728056 100752961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03367 199 478 Miscellaneous Gene Families AT2G24640 25.081 1.24e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03367 K11838 - gmx:100810922 2159.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03367 6 100728056 100752961 Seca6g03367 6 100728056 100752961 ECH
Seca8g05007 8 139415130 139417111 Seca6g03367 6 100728056 100752961 ECH
Seca2g04955 2 136180526 136182781 Seca6g03367 6 100728056 100752961 ECH
Seca6g03367 6 100728056 100752961 Seca6g03367 6 100728056 100752961 PCT