Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11870 ATGGAAGGCAATATACCAGTACTCACTAAGAAAGTGTGGAACATACTACGTGTGGCCTTCTTCATGTTGAGGAAAGGCGTTTCCAAAGGAAAGATAATGATGGACCTCAACATGACGCTCAAACGCCGCGGCAAGCTCGCCGGAAAAGCCATCACCAACCTCATGTTCCACCACCACGCTGGCTCCACCTCAAGCCGCCGCTCCCACGACGATCCAACCTTGCAATTCTCTGCCGCGAGGGAGTACGAGTTCAGTTGCAGCAACACACCAAACTTGTTCAACAAGCGCCACCGCCACAACCACTTCTTCGCGTGTGCTCACGCGCCTGCCACGCTGGACGACGATGCAGTGACGGTTAATGCAGTTAAGGCGGTGTTGGAGATGCTGAACAAGAATGAGGGAACGGTTTCGCCCGCACTCCCCGGGTTTGGACGGAGCCCGATGGTGAGGCAGTTGAGGGTAACAGACTCGCCATTCCCAATGCCAACAAACAGTAGTGGTAGTGAGATTGAGGAAGAGAAGGACAACCAGGTCGACAAAGCTGCTGAAGAGTTCATAAAGAGGTTCTACATGGAGTTGAGGAAACAGGCTTAA 594 0.5286 MEGNIPVLTKKVWNILRVAFFMLRKGVSKGKIMMDLNMTLKRRGKLAGKAITNLMFHHHAGSTSSRRSHDDPTLQFSAAREYEFSCSNTPNLFNKRHRHNHFFACAHAPATLDDDAVTVNAVKAVLEMLNKNEGTVSPALPGFGRSPMVRQLRVTDSPFPMPTNSSGSEIEEEKDNQVDKAAEEFIKRFYMELRKQA. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11870 197 Pfam Cotton fibre expressed protein 175 196 IPR008480 -
Seca4g11870 197 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11870 Seca-Chr4 259362730 259363323 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11870 - - pcin:129289402 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08700 4 207183655 207184278 Seca4g11870 4 259362730 259363323 ECH
Seca12g06723 12 159315221 159315838 Seca4g11870 4 259362730 259363323 ECH
Seca4g11870 4 259362730 259363323 Seca4g11870 4 259362730 259363323 ECH
Seca4g11870 4 259362730 259363323 Seca4g08700 4 207183655 207184278 PCT