Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06723 ATGGAAATTGAGGGAAGCCAACCGGTGGTAGCAAAGAAGCTATGGAACATGGTACGCGTATTTATCTTTATGTTGAGAAAAGGCATAGCCAAGAGCAAACTAACCGTAGAGCTCAATTTGATCCTCAAACGTGGCAAACTCGCTGGGAAGGCCTTAGTAAACGCCCTCATGCTCCATCACCAATACTATGCCGCCACGTTCACCTGTCGCTCCCACAACACCTTCATTTCTCCTCGCGAGTATGAGTTCAGCTGCAGTAACAGCCCTGCTAACCCTTTCCAAGCCATCAAACGCAAACACCACCGCTTCTCCAAGTCTTCCCAATACGACGACGTTTCCACCTTGAGTGCCGTTCAGAAGGTGCTTGAAATGCTCAACAATGACAAGGTGGAGACTAATTGTTCTAATTCCCCTTTGGTCACATTGCCTGGGTTTGGGAACAGCCCAATTGGGAGGCAATTAAGGGTCACTGATTCTCCTTTTCCTCTCAAGGACGAAGGGGATAGCCAAGTCGATATGGCAGCTGAGGAATTCATTAACAAGTTCTATAAAGACCTTAACTTGCAAAAGAGAATGGCTGCTCTTGATTCACCCTACCATAACTCATGGGACAGATGA 618 0.4709 MEIEGSQPVVAKKLWNMVRVFIFMLRKGIAKSKLTVELNLILKRGKLAGKALVNALMLHHQYYAATFTCRSHNTFISPREYEFSCSNSPANPFQAIKRKHHRFSKSSQYDDVSTLSAVQKVLEMLNNDKVETNCSNSPLVTLPGFGNSPIGRQLRVTDSPFPLKDEGDSQVDMAAEEFINKFYKDLNLQKRMAALDSPYHNSWDR. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06723 205 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 197 - -
Seca12g06723 205 Pfam Cotton fibre expressed protein 169 192 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06723 Seca-Chr12 159315221 159315838 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06723 - - qsu:112027219 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06723 12 159315221 159315838 Seca4g08700 4 207183655 207184278 ECH
Seca12g06723 12 159315221 159315838 Seca4g11870 4 259362730 259363323 ECH
Seca12g06723 12 159315221 159315838 Seca12g06723 12 159315221 159315838 ECH
Seca12g06723 12 159315221 159315838 Seca12g06723 12 159315221 159315838 PCT