Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08700 ATGGAAAATAATCTACCAGTACTAGCCAAGAGAGTGTGGAGCATGGTACGTGTGGTATTCTTCATGTTGAGAAAAGGCATATCAAAGGGCAAACTAATGATGGACCTCAACATGATCCTCAAACGCCGCGGCAAGCTCGCCGGAAAAGCCATTGCCAACTTAATGTTCCACCACCACCACCACAACGGTGGCTCCACCTCAAGCTCACACCTCCAATTCTCTGCTCCAAGGGAGTACGAGTTCAGTTGCAGCAACACGCCTAACAACTACTTCTTCCCTGTAGGGAAGCGTAACCGTCACAACAACCACAACCACAACCACTTTTTCGCGTGTGCTCACGCTCCATCCACACACGATGATGACGTGGTGACGGTTAATGCAGTGAAGGCGGTGCTTGAGATGCTAAACAATAACGAAGGTTTGATGGCAGAGGCATCCCCTGCGTTGCCAGGGTTTGGGCGTAGCCCAATGGTAAGGCAGTTGAGGGTGACGGACTCACCGTTTCCTCTGAGAGATGGTGAAGATGAGAAAGATAATCAAGTGGATAAGGCTGCTGAAGAGTTCATAAAGAGGTTTTACAAGGAGTTGAGGAAGCAAGATTAA 603 0.4892 MENNLPVLAKRVWSMVRVVFFMLRKGISKGKLMMDLNMILKRRGKLAGKAIANLMFHHHHHNGGSTSSSHLQFSAPREYEFSCSNTPNNYFFPVGKRNRHNNHNHNHFFACAHAPSTHDDDVVTVNAVKAVLEMLNNNEGLMAEASPALPGFGRSPMVRQLRVTDSPFPLRDGEDEKDNQVDKAAEEFIKRFYKELRKQD. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08700 200 Pfam Cotton fibre expressed protein 178 199 IPR008480 -
Seca4g08700 200 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 3 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08700 Seca-Chr4 207183655 207184278 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08700 - - gmx:100786928 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g08700 4 207183655 207184278 Seca4g11870 4 259362730 259363323 ECH
Seca12g06723 12 159315221 159315838 Seca4g08700 4 207183655 207184278 ECH
Seca4g08700 4 207183655 207184278 Seca4g08700 4 207183655 207184278 ECH
Seca4g11870 4 259362730 259363323 Seca4g08700 4 207183655 207184278 PCT