Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05061 ATGGCTTCGGCTACTCTTTCTGTAGCCAAACCAGCTCTTCAGGCAAATGGGAAGGGCTTCTCTGAGTTTTCTGGCCTTCGCAATTCATCATCAAGTTACCTTCCCTTTTCTTCTAGAAAATCTTCAGAGGACTTCTATTCAGTCATTGCCTTCCAGACCTCAGCAGTTGGAAGCAGCGGGGGATATAGGAAAGGTGTGGTAGAAGCAAAGCTGAAAGTGGCCATAAATGGGTTTGGTAGAATTGGGAGGAACTTCTTGAGGTGTTGGCATGGTAGGAAAGAGTCACCTCTTGATGTCATTGCCATAAATGACACTGGAGGTGTCAAACAAGCCTCTCACCTTCTCAAGTATGACTCAACCCTTGGAATCTTTGATGCTGATGTCAAGCCTGTTGGTGATAATGCCATCTCTGTTGATGGGAAGGTCATTAAGGTTGTCTCTGACCGCAACCCTGCTAACCTCCCGTGGAAAGACTTGGAGATTGACTTGGTGATTGAAGGAACAGGGGTGTTTGTGGACAGAGAAGGAGCAGGGAAACACATTCAGGCAGGAGCAAAAAAAGTGCTCATCACAGCCCCTGGCAAAGGAGATATTCCCACCTATGTGGTTGGTGTCAATGCTGATGCTTACAGCCCTGATGAACCCATCATCAGCAATGCCTCTTGCACCACTAACTGCCTTGCACCTTTTGTCAAGGTCCTTGATCAGAAATTTGGTATTATCAAGGGTACAATGACAACTACTCACTCCTACACTGGTGACCAAAGGCTTCTTGATGCGAGTCACCGTGACCTTAGACGTGCCAGAGCAGCTGCCCTTAACATTGTCCCAACCTCAACAGGAGCAGCAAAGGCTGTGGCTCTTGTCCTTCCAACTCTCAAAGGCAAACTCAATGGCATTGCCCTCCGTGTCCCTACACCAAATGTTTCAGTGGTGGACCTTGTTGTTCAGGTCTCAAAGAAGACCTTTGCTGAAGAAGTGAATGCTGCTTTCAGAGAGAGTGCAGAGAAGGAGCTTAATGGCATTCTCTCTGTCTGTGATGAGCCTTTAGTCTCCGTTGATTTCAGGTGCTCTGATGTCTCATCCACCGTTGACTCTTCATTGACTATGGTCATGGGTGATGACATGGTCAAGGTCATTGCTTGGTATGACAATGAGTGGGGTTACTCACAAAGGGTTGTGGATTTGGCTGACATTGTTGCCAACAACTGGAAGTGA 1218 0.4729 MASATLSVAKPALQANGKGFSEFSGLRNSSSSYLPFSSRKSSEDFYSVIAFQTSAVGSSGGYRKGVVEAKLKVAINGFGRIGRNFLRCWHGRKESPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPANLPWKDLEIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYSPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05061 405 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 222 384 - -
Seca10g05061 405 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 72 395 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Seca10g05061 405 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 220 227 IPR020830 GO:0016620
Seca10g05061 405 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 227 383 IPR020829 GO:0016620
Seca10g05061 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 180 193 IPR020831 GO:0016620
Seca10g05061 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 243 259 IPR020831 GO:0016620
Seca10g05061 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 339 354 IPR020831 GO:0016620
Seca10g05061 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 216 234 IPR020831 GO:0016620
Seca10g05061 405 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 299 316 IPR020831 GO:0016620
Seca10g05061 405 Gene3D Dihydrodipicolinate Reductase; domain 2 221 385 - -
Seca10g05061 405 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 72 173 IPR020828 GO:0051287
Seca10g05061 405 Gene3D - 72 397 - -
Seca10g05061 405 FunFam Glyceraldehyde-3-phosphate dehydrogenase 221 385 - -
Seca10g05061 405 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 70 405 IPR020831 GO:0016620
Seca10g05061 405 SMART gp_dh_n_7 71 222 IPR020828 GO:0051287
Seca10g05061 405 FunFam Glyceraldehyde-3-phosphate dehydrogenase 71 229 - -
Seca10g05061 405 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 70 238 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05061 Seca-Chr10 116236983 116239263 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05061 K05298 - mnt:21390976 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05061 10 116236983 116239263 Seca4g02890 4 49841218 49844404 ECH
Seca10g05061 10 116236983 116239263 Seca10g05061 10 116236983 116239263 ECH