Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05575 ATGTCATCTGCCGGTGTCACCACCCTTAGTCCGGTTCCCACTGAACCATTGTTGTCTCCAAAGGCATTTCATTTCCCATCACATTTGTCTTTGGAGGATAAGTCCATTTTCATATATCTCTCCTTTTCTGGCTCATTGACTCCAATCCGTGTTATGGAATGGGATACCATTGAGGCTGTGAAATTCAAAATCCAAAGGTGTGAGAGCCTTCCACTTTTAACAAACAAACAGAAGCTGGTTTATGCTGGCCGGGAACTAGCACGAAGTCATTCTCTACTCAAGGACTATGGAGTAACAGATGGAAATGTGTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTGCTTGTGGGAAGGAATTCACTTTTCAGGTGGAAAGAGGTAGGGATGTTGGGTATGTCAAGCAACGGATTGCGAAAAGGGAGAAGCAATTTGATGATCCTGAGCAGCAGGAACTTGTGTGTAATGGGGAACGGCTTGAGGACCAGAGGCTTATTGATGACATCTGCTGCAAGCATAATGATGCTGTGGTACATCTGTTTGTTAGAAAAAAGCATGCAAAAGTTCAGAGAAGACCCCTTGAGTTGTCCATTGTAGCAACAGATTTGACTGATAAGAAAACAAATGATGTTAATGGGAATTCTTATGGGAGAAAATATGAACTTGGGAAAGAAGATACTATTAGGAATTCTGATGCCATTCAAAGTGTTGTGCCAAGAAAGCCTCCTGATAGAGATTTTATTTTGGAGCCGATTATTGTTAACCCTAAAATTGAATTAGCTTCAGTGATTTGGAATATGGTAAAGTCTACATATGATGGACTGGATAATGGAAACTACCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAACAGGGCAAAAGTATGTATCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCTCTTTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAATAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCATATGTTTTAGACCATCCAATGAGTGGGCGCCACACATTATTTGGTGGTGAAAAGGGCTTTGCTGGTGTTCCCCCAACATTAATGGTTAAGTGCTTGCATAAAGGATTTAACCATCCAGGAGACTTGACTACCAAGATTGGCTCCATGCAGATGTTTGTGGAAAATAATGGAAGCTGTGAAGATATGGGCCCTGGGGCTTTCCCAGTGAAGGAAGTACATAAAATTACTGTATTGGACATAAGACTGGCAAATGTAGATAGACATGCTGGGAATATTTTACTCAGCACTGAGGAGGACAGCAACCAATCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGCTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCCCAAGCTCGCCAGCCATACTCCAAAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATTTCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCTCGCACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACACCTTTTGCCATTGGAAGCCTGATGTGCAGGGACTCCTTGAACAAGGAATCTGTGATAGAGGAAATAGTTCAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATTCTGTTTCCCAAATCATGGACCAGCGGCTTGATGAGATCGTTAGCTCCCGTTTATAA 1794 0.422 MSSAGVTTLSPVPTEPLLSPKAFHFPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIEAVKFKIQRCESLPLLTNKQKLVYAGRELARSHSLLKDYGVTDGNVLHLIIKLSDLQVINVKTACGKEFTFQVERGRDVGYVKQRIAKREKQFDDPEQQELVCNGERLEDQRLIDDICCKHNDAVVHLFVRKKHAKVQRRPLELSIVATDLTDKKTNDVNGNSYGRKYELGKEDTIRNSDAIQSVVPRKPPDRDFILEPIIVNPKIELASVIWNMVKSTYDGLDNGNYPIRSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTIVGQGAFREVAAYVLDHPMSGRHTLFGGEKGFAGVPPTLMVKCLHKGFNHPGDLTTKIGSMQMFVENNGSCEDMGPGAFPVKEVHKITVLDIRLANVDRHAGNILLSTEEDSNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSKETIDYIKSLDAEEDISLLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGSLMCRDSLNKESVIEEIVQAALDSVLPGTSEATLLDSVSQIMDQRLDEIVSSRL. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05575 597 Gene3D - 35 109 - -
Seca2g05575 597 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Seca2g05575 597 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Seca2g05575 597 Gene3D - 115 201 - -
Seca2g05575 597 SMART ubq_7 36 109 IPR000626 GO:0005515
Seca2g05575 597 SMART ubq_7 114 188 IPR000626 GO:0005515
Seca2g05575 597 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Seca2g05575 597 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Seca2g05575 597 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Seca2g05575 597 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Seca2g05575 597 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Seca2g05575 597 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 47 566 IPR044571 -
Seca2g05575 597 CDD Ubl_ubiquitin_like 116 186 - -
Seca2g05575 597 SUPERFAMILY Protein kinase-like (PK-like) 434 592 IPR011009 -
Seca2g05575 597 SUPERFAMILY Ubiquitin-like 35 110 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05575 Seca-Chr2 142056215 142060038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05575 33 591 Acyl Lipid Metabolism Gene Families AT5G24240 56.184 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05575 - - gmx:100791631 1069.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05575 2 142056215 142060038 Seca4g02573 4 44109745 44113698 ECH
Seca2g05575 2 142056215 142060038 Seca2g05575 2 142056215 142060038 ECH
Seca2g00386 2 5313818 5317941 Seca2g05575 2 142056215 142060038 ECH
Seca2g05575 2 142056215 142060038 Seca2g05575 2 142056215 142060038 PCT