Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02573 ATGATGGCTTGTTTGACACTTAGTCCAATGCATAGAGATTCTTTTAACACCCATGGTGAATTTGCCAGCTGTTTCAGTCCTCATTTGAGGGACTCAATTTTGATTTACCTAACTGTTGGTGGATCTGTGATTCCCATGCATATTATGGAAACGGATTCAATTGCTTCAGTGAAGCTGAGAATTCAAACCTTCAAAGGTTTTTTTGTAAAGAAACAAAAACTGGTTTTTGAAGGGAAGGAATTGGCTCGTAACAAATCTTATATCCGTGATTATGGTGTTGCTGATGGGAATGTGTTGCATCTAGTGCTAAGGCTTTCTGACCTTCAAGCTATTACTGTTAGGACTGTATGTGGAAAGGAGTTTGGGTTTTATGTTGAGAAGAATAGGAATGTGGGTTATGTGAAGCGCCAGATTGCAAGGAAAGGGCAAGGGTCGTTAGATTTTGCAGATCAGGAATTGGTATGGGAGGGTGAGGCACTTGAAGACCAGAGACTTATTGAGGATATCTCTAAGGACAATGATGCTGTAATTCACTTTTTGGTCAGGATATCAGATACCAAGGTAAGGACTAAACCAGTTGAGAAGGATTTTGAATTATCAATTGAGGCATCATTCACACACAATACAGTGCCAAATGTAAGTGCATACCAGTTAGGATCAGTGTCTATAACAGAGAAGGTCCTGAACAGGAATCAATTGACAAGAGATTTCCTTTTGGAACCAATTATTATGAATTCCAGTATCAAATTTCCACTAGTAATCCAGGAGCTAATTAAGACTACATCAGCGGGGTTAGAAAAAGGCAGTAAACCAATCCAATCTTCAGAGGGATCGGGAGGAGCTTATCTCATGCAAGATTCATTTGGCTTAAAGTATGTATCTGTTTTCAAGCCTATTGATGAGGAGCCAATGGCAATCAATAATCCTCGAGGCCTACCTGTCTCTATGGATGGTGAAGGGTTAAAGAAAGGCACGCGAGTAGGGCAAGGTGCATTGAGAGAAGTTGCAGCTTACATTTTGGATCATCCTAGGAAAGGACCTCGATCATGTTATTACAATGAGGAACCGGGGTTTGCTGGAGTTCCTCCTACAGTCATGGTCAGATGCTTGCATAAAGGATTCCATCATCCTGAAGGTTATAAGAATGTTTCAGGTAATATTAAAATAGGGTCGCTTCAGATGTTTATGAGGAATATTGGAAGTTGTGAAGACATGGGCCCTAGTGCATTTCCAGTGGAAGAGGTACACAAGATCTCTGTGCTGGATATCAGGTTGGTAAATGCTGATAGGCATGCTGGGAACATTTTGGTTGCCAAGGATGGTGAAGATGGTCCAACTGTCCTTATTCCAATTGATCATGGCTATTGCTTGCCTGAAAGCGTATTTGAAGACTGTACATTTGACTGGTTATACTGGCCACAAGCTCAAGAGCCTTACTCCCTAGACACCATTGAGTACATAAAATCTCTGGATGCTGAAGAAGATATTAAGCTTTTGAAGTTTCATGGATGGGACCTTCTTCCTGAATGTGCCCGGATACTTCGTATATCAACCATGCTTCTTAAGAAAGGTGCAGAGAAAGGACTCACTCCTTTTGCCATTGGAAGCATCATGTGTAGAGAAACACTGAAGAAAAAATCTGTCATTGAGCAGATTATTCAGGAAGCGGAGGAAGCTGCACTTCCTGGAGCAAGTGAAGCTGAATTTCTTGATCTTGTTTCAGTGATCATGGATAGTCATTTAGAAGAGCTGTTCCCATGA 1761 0.4117 MMACLTLSPMHRDSFNTHGEFASCFSPHLRDSILIYLTVGGSVIPMHIMETDSIASVKLRIQTFKGFFVKKQKLVFEGKELARNKSYIRDYGVADGNVLHLVLRLSDLQAITVRTVCGKEFGFYVEKNRNVGYVKRQIARKGQGSLDFADQELVWEGEALEDQRLIEDISKDNDAVIHFLVRISDTKVRTKPVEKDFELSIEASFTHNTVPNVSAYQLGSVSITEKVLNRNQLTRDFLLEPIIMNSSIKFPLVIQELIKTTSAGLEKGSKPIQSSEGSGGAYLMQDSFGLKYVSVFKPIDEEPMAINNPRGLPVSMDGEGLKKGTRVGQGALREVAAYILDHPRKGPRSCYYNEEPGFAGVPPTVMVRCLHKGFHHPEGYKNVSGNIKIGSLQMFMRNIGSCEDMGPSAFPVEEVHKISVLDIRLVNADRHAGNILVAKDGEDGPTVLIPIDHGYCLPESVFEDCTFDWLYWPQAQEPYSLDTIEYIKSLDAEEDIKLLKFHGWDLLPECARILRISTMLLKKGAEKGLTPFAIGSIMCRETLKKKSVIEQIIQEAEEAALPGASEAEFLDLVSVIMDSHLEELFP. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02573 586 SUPERFAMILY Ubiquitin-like 38 106 IPR029071 -
Seca4g02573 586 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 268 568 IPR000403 -
Seca4g02573 586 ProSiteProfiles Ubiquitin domain profile. 109 186 IPR000626 GO:0005515
Seca4g02573 586 SMART ubq_7 33 104 IPR000626 GO:0005515
Seca4g02573 586 SMART ubq_7 109 182 IPR000626 GO:0005515
Seca4g02573 586 Gene3D - 109 200 - -
Seca4g02573 586 Pfam Ubiquitin family 39 105 IPR000626 GO:0005515
Seca4g02573 586 Pfam Ubiquitin family 111 182 IPR000626 GO:0005515
Seca4g02573 586 Pfam Phosphatidylinositol 3- and 4-kinase 277 533 IPR000403 -
Seca4g02573 586 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 42 559 IPR044571 -
Seca4g02573 586 SUPERFAMILY Ubiquitin-like 107 184 IPR029071 -
Seca4g02573 586 Gene3D - 31 108 - -
Seca4g02573 586 ProSiteProfiles Ubiquitin domain profile. 31 104 IPR000626 GO:0005515
Seca4g02573 586 CDD Ubl_ubiquitin_like 111 178 - -
Seca4g02573 586 FunFam Phosphatidylinositol 4-kinase gamma 4 30 109 - -
Seca4g02573 586 SUPERFAMILY Protein kinase-like (PK-like) 419 584 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02573 Seca-Chr4 44109745 44113698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02573 2 583 Acyl Lipid Metabolism Gene Families AT5G24240 61.684 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02573 - - gmx:100812724 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05575 2 142056215 142060038 Seca4g02573 4 44109745 44113698 ECH
Seca4g02573 4 44109745 44113698 Seca4g02573 4 44109745 44113698 ECH