Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03672 ATGCGCAAACAACGCAGTAACAAAAGCACCCTCTTTCTCTTCCTCTTGATCCTTCTCTCGACACTCACAGTTGGTTCCAGCGTCGATGCAGGACAGCAAAACCAAAACCCATTCACCCCAAAGGCTTTCGTGATCCGCTATTGGGACAGACAGATCCAAAACAACTTACCAAAGCCATCCTTCCTCCTCTCCAAGGCTTCACCACTAAGCGCCACCGACGCTGCCGCATTCACTAAGCTCGCCGCCACCAACACCCTCTCCACGCGGCTGCCGGAATTCTGCTCCGCCGCACACCTCCTCTGCTTCCCGGAAGTGAGACCCAGCCTGGACAAACACTCCCAAGACGGCAGCTTCCAAGTGTACAATGACGGCCAAAACTTCACCAACTACGGAAAAGGTGGACTTGACGGCCTCAACTCGTTCAAGAACTACTCCAACGATATCTTCAGTAATCCAGTGAACGATTTCCGGGCATACAGCCGCAGCTCCGCCGAACAAAACGACAGTTTCACTAGCTACGGAACAGAGACCAACGTGGTGGACCAGAGCTTCCACACATATGGCACCAAATCCACCTTGGGCTCCAGCGAGTTTAAAGAGTACACGAGGGAATCCAACGTTCCCAACCTCCGTTTCACCACCTACTCAACCGAAACCTTCGGGAGGAAGCAAGAGTTCTCCAGCTACAGCGAAGACGGGAACGCAGGGGACCAGAGTTTCTCTAACTACGGCAAGAACTCCAACGGCGCCGTTAACGATTTCACCACCTACGGGACGGACTCTAACGTCGTCGGGTCCGGTTTCTCGAGCTATGCCCAGAAAGGAAACGGCGCACAGGATACATTCAAGAACTACGGGGTGAACATGAACAACCCCACCGAGAATTTCAAGAATTACGCCAATGGAGGTTTCATTGCCACCGAGAGCTTCTCCAATTACAGAGACCAGGCCAATGTTGGAGCTGACTCGTTTCAGTCCTACGCTAAAGACTCATCCCGCACCGAGGTGGATTTCAACAACTACGGCAAGTCCTTCAACGAAGGAACCGACACTTTTAAAGGGTACGCCAAAGGAGCAGATGGGTTACAGAAAGTTAGCTTCAAGGAATACGGCGTTAACAACACCTTCAAGGATTACTCCAAACAGGGTGTTTCCTTTGCCGCTTACACCAACTCCTCCACTTCCTCTACCAAGACTGTCAGTGACAGTTTGGTAAAAAAATGGGTCCAGCCAGGAAAGTTCTTTCGCGAGAAGATGCTCAAGCAGGGGACGGTGATGCCCATGCCTGATATAAAAGATAAATTGCCTCAAAGGTCCTTTTTGCCCCGCTCCATTATGACCAAATTGCCCTTCTCATCTTCCAAGCTCGCTGAGCTGAAGCGCGTGTTCAGGGTCTCTGATAACTCCTCCATGGACAAGATGATCGTGGACTCGTTAGGTGAGTGTGAAAGGGCGCCAAGCCGGGGCGAGACCAAACGCTGCGTGGGCTCGATCGAGGATATGATTGACTTTGCAACCTCTGTTCTGGGTCGCAACGTGACGGTTCGGTCCACCGAAAGCACAAACGGGTCGAAGAAGAACGTCATGGTGGGTCGGGTCAAGGGCATAAACGGTGGGAAAGTCACTCAATCCGTGTCGTGTCATCAGAGCTTGTTCCCTTATTTGCTATATTACTGCCACTCGGTTCCCAAAGTTCGGGTCTATGAAGCGGATCTTCTAGACCCGGATACCAAGGCCAAGATTAACCACGGTGTTGCCATCTGTCACTTGGACACTACTGCTTGGAGCCCCACCCATGGTGCATTCATGGCCCTAGGGTCGGGTCCAGGTCGGATTGAAGTGTGCCACTGGATCTTTGAGAATGACATGACCTGGACAACTGCTGATTGA 1890 0.519 MRKQRSNKSTLFLFLLILLSTLTVGSSVDAGQQNQNPFTPKAFVIRYWDRQIQNNLPKPSFLLSKASPLSATDAAAFTKLAATNTLSTRLPEFCSAAHLLCFPEVRPSLDKHSQDGSFQVYNDGQNFTNYGKGGLDGLNSFKNYSNDIFSNPVNDFRAYSRSSAEQNDSFTSYGTETNVVDQSFHTYGTKSTLGSSEFKEYTRESNVPNLRFTTYSTETFGRKQEFSSYSEDGNAGDQSFSNYGKNSNGAVNDFTTYGTDSNVVGSGFSSYAQKGNGAQDTFKNYGVNMNNPTENFKNYANGGFIATESFSNYRDQANVGADSFQSYAKDSSRTEVDFNNYGKSFNEGTDTFKGYAKGADGLQKVSFKEYGVNNTFKDYSKQGVSFAAYTNSSTSSTKTVSDSLVKKWVQPGKFFREKMLKQGTVMPMPDIKDKLPQRSFLPRSIMTKLPFSSSKLAELKRVFRVSDNSSMDKMIVDSLGECERAPSRGETKRCVGSIEDMIDFATSVLGRNVTVRSTESTNGSKKNVMVGRVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPDTKAKINHGVAICHLDTTAWSPTHGAFMALGSGPGRIEVCHWIFENDMTWTTAD. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03672 629 ProSiteProfiles BURP domain profile. 414 628 IPR004873 -
Seca12g03672 629 SMART BURP_2 412 628 IPR004873 -
Seca12g03672 629 Pfam BURP domain 414 626 IPR004873 -
Seca12g03672 629 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 19 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03672 Seca-Chr12 93832006 93834268 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03672 - - gmx:100779518 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03672 12 93832006 93834268 Seca4g03089 4 53029143 53029532 ECH
Seca12g03672 12 93832006 93834268 Seca12g03672 12 93832006 93834268 ECH
Seca10g01489 10 16068291 16070986 Seca12g03672 12 93832006 93834268 PCT