Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01489 ATGAACAAACAACTCACCTTCCTCTGTTTCTTTATCCTCTTCTTCTCATCTCTCAGTGTTGGTTTCGCCGGCGATGCGGTGGCCGGAGAGAAAAACCCGTTCACCCCAAAGGCTTTTGTGATTCGTTATTGGGACAAAGAGATCCGCAACGGCTTGCCTAAACCATCGTTCCTTCTTTCAAAGGCATCACCACTGAGCGCGGTGGACGCGGCGGCGTTCTCCAAGCTAGCCTCCACCGGCAACGGCAACGGCAACGCCATCTCCACGCGCCTGCCGGAATTTTGCTCCGCCGCGAAGCTCCTCTGTTTCCCAGAACTTGGTTCCAGCCTCGAGAAGCACGACAAGGACGCAAACTTCGCAGTGTACCAAGACAAGAACTTCACCAACTACGGAACGGGTCGACCCGGTGGTGTCGACTCGTTCAAGAACTACTCCGATGGTCAGAACATTCCGGTGAACGATTTCCGGCGATACAGCCGCGACTCCGCCGGTCACAAGGACAGTTTCCTCAGCTACGGCACAGAAGGCAACGTGGTGGACCAAAGCTTCCACACCTACGCCGCCGGAGCAACCGGCGGCGCCGGTGAGTTCAAGCGTTACTCCAACGAAGTCAATGTCCCTAACCTCCGTTTCTCCTCTTACTCCGATGACGCCAACGGAAGAACCCAATCATTCTCCTCCTACTCAGAAAACGGCAATGCCGGAGAACAATCCTTCACCAGTTACGGCAAAAACGGCAATGGCCCCACCGATGAGTTCACATCATACGGCACAGGCTCTAACGTCGTTGGTTCAGGGTTTTCCAATTACGCAGAAACATCAAACGCCGCAAACGACACTTTCAAAGGCTACGGCGTGGACATGAACAACCCTACCAACACCTTTACAAACTACGCCAACGGCGGTAACGGCGCCGTCGAGAGCTTCTCCAATTACCGTGAAAAAGCAAATGTTGGAGCCGATTCATTCACCTCTTACGCCAAGGGTTCCAACGCCGCGAAGGTGGATTTCAACAACTACGGAAAATCCTTCAATGAAGGAACCGACACATTCACCAGCTACGCCAAAACCGCCAATGGTGAAACCAAGGTTGGTTTCAAAGGCTATGGTGTTAACAACACTTTCAAGGATTACACCAAAGAAGGTGTCTCGTTCGCTAAGTACACCAACGTGAGCACAACGTTGAGTGCTTCAATGGCGAAAACAGGGGTCAGTGGCAGTTTGGTAAATAAGTGGGTTGAACCGGGTAAATTCTTTAGGGAGAAGATGATGAAAGAAGGGACGGTGATGCCTATGCCTGACATTAGGGATAAAATGCCTGAAAGGTCGTTTTTGCCCCGGAGTATATTGTCGAAATTACCGTTTTCTACCTCCAAGATCTCTGAGTTGAAGCAAATGTTTAAGGCTTCTGATAATGGTTCAATGGAGAAGATGATGAGGGATTCGTTGGAAGAGTGTGAAAGGGTTCCCAGTCCCGGCGAAACCAAACGGTGTGTGGGTTCTATTGAGGACATGATTGACTTTGCAACCTCTGTTTTGGGTCGCAACATTGTGGTTCGGACTACCCAGAATGTAAACGGGTCAAAGAAGAATGTTTTGGTGGGTCGGGTTCAAGGGATTAATGGTGGGAAAGTTACCCGATCCGTTTCTTGTCACCAGAGTTTGTTTCCTTATCTGCTTTACTATTGCCACTCTGTCCCAAAAGTTCGGGTCTACCAAGCGGATCTTCTTGACCCGAATACTAAGGAAAAGATCAACCATGGTGTTGCCGTGTGTCATTTGGATACCTCGGATTGGAGCCCTAATCATGGGGCTTTTCTTTCTCTCGGGTCGGGTCCGGGTCGGATTGAGGTATGTCACTGGATCTTTGAGAATGACATGAGCTGGACTATTGCTGATTGA 1902 0.5021 MNKQLTFLCFFILFFSSLSVGFAGDAVAGEKNPFTPKAFVIRYWDKEIRNGLPKPSFLLSKASPLSAVDAAAFSKLASTGNGNGNAISTRLPEFCSAAKLLCFPELGSSLEKHDKDANFAVYQDKNFTNYGTGRPGGVDSFKNYSDGQNIPVNDFRRYSRDSAGHKDSFLSYGTEGNVVDQSFHTYAAGATGGAGEFKRYSNEVNVPNLRFSSYSDDANGRTQSFSSYSENGNAGEQSFTSYGKNGNGPTDEFTSYGTGSNVVGSGFSNYAETSNAANDTFKGYGVDMNNPTNTFTNYANGGNGAVESFSNYREKANVGADSFTSYAKGSNAAKVDFNNYGKSFNEGTDTFTSYAKTANGETKVGFKGYGVNNTFKDYTKEGVSFAKYTNVSTTLSASMAKTGVSGSLVNKWVEPGKFFREKMMKEGTVMPMPDIRDKMPERSFLPRSILSKLPFSTSKISELKQMFKASDNGSMEKMMRDSLEECERVPSPGETKRCVGSIEDMIDFATSVLGRNIVVRTTQNVNGSKKNVLVGRVQGINGGKVTRSVSCHQSLFPYLLYYCHSVPKVRVYQADLLDPNTKEKINHGVAVCHLDTSDWSPNHGAFLSLGSGPGRIEVCHWIFENDMSWTIAD. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01489 633 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 14 633 - -
Seca10g01489 633 SMART BURP_2 416 632 IPR004873 -
Seca10g01489 633 MobiDBLite consensus disorder prediction 211 256 - -
Seca10g01489 633 Pfam BURP domain 418 630 IPR004873 -
Seca10g01489 633 ProSiteProfiles BURP domain profile. 418 632 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01489 Seca-Chr10 16068291 16070986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01489 - - gmx:100776642 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01489 10 16068291 16070986 Seca10g01489 10 16068291 16070986 ECH
Seca10g01489 10 16068291 16070986 Seca12g03672 12 93832006 93834268 PCT