Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00308 ATGTTGAGAGAACTTGTAAAGAGATGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGCTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGAAGGTCACTTCCACCCCTTAATGAAGTTGGGCTGACTTGCTTCCGCGATTTGGTTTACAAGGAAGTAAATGGGAAAGTGAGAGATGCAGTTATTTCACTTATTGATCAAGAACGCGAGGGAGAGCAGATTGATCGAGCTCTATTAAAGAATGTATTAGATATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTCAAAGACACATCTGCTTATTATTCTCGAAAGGCTTCAAATTGGATCCTAGATGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGTAGTGAGCCAAAGCTATTAGAGAAAGTTCAACATGAGCTGCTATCCGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTCAGAGATGACAAGGTTGTAGACTTGTCAAGGATGTTCAGGCTATTTTCTAAAATACCTCGTGGCTTGGATCCTGTTTCTAGTATGTTTAAGCAGCATGTCACCACTGAAGGTATGGCGTTGGTGAAGCTGGCTGAAGATGCAGCTAGTAACAAAAAGGCTGATAAAAAGGATACTGTTGGTCCACAGGAGCAGCTTTTTGTTCGGAAGGTGATTGAGCTGCATGATAAGTACCTGGCATATGTGAACGACTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTCGCTGGTAGCTCAAGCGCAGAACTTCTTGCCACCTTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAGTCGAAGAAACTCTTGAAAAGGTGGTGAAGCTGCTCGCCTATATTAGTGACAAAGACTTGTTTGCTGAGTTCTATAGGAAAAAGCTTGCTCGAAGGCTTCTTTTTGACAAAAGTGCCAATGATGATCATGAGAGAAGCATTTTGACAAAATTGAAGCAACAGTGTGGTGGACAGTTTACCTCGAAGATGGAAGGAATGGTTACAGATTTGACGTTAGCAAAGGAGAACCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCTAATGCAGACCCTGGAATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCAGCAGAAATGATTAGGTGCGTTGAAGTCTTCAAAGAATTTTATCAAACTAAAACAAAGCACAGAAAACTTACATGGATTTTCTCCTTGGGTACCTGCAACATAAGTGGGAAATTTGAACCAAAAACTGTGGAGCTGATTGTTACAACTTACCAGGCTTCAGCATTGCTGCTTTTTAATTCCTCGGATAGACTGAGTTATTCGGAGATAATGACTCAATTAAACTTATCTGATGATGATGTTATTAGACTGCTCCACTCCTTGTCATGTGCCAAGTACAAGATTCTTAGCAAGGAACCAAATACAAAAATGATATCATCCACAGATTATTTTGAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGAGTGGAATTATGTCATTCTTCATGCAGATTCCTCTTCCGCCTGTGGATGAGAAGAAAAAGGTAATTGAGGATGTTGACAAGGACAGAAGATATGCCATTGATGCCTCAATTGTTCGTATTATGAAGAGTCGGAAAGTTTTGGGCTACCAACAGTTAGTCATGGAGTGTGTTGAGCAATTGGGTCGTATGTTCAAGCCTGATGTCAAGGCAATTAAAAAGCGGATTGAAGATTTGATTTCTCGAGATTACCTGGAAAGAGACAGAGAGAATGCAAATTTGTTCAGGTACTTGGCTTGA 1986 0.3998 MLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKEVNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILDDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVVDLSRMFRLFSKIPRGLDPVSSMFKQHVTTEGMALVKLAEDAASNKKADKKDTVGPQEQLFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAVEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIFSLGTCNISGKFEPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILSKEPNTKMISSTDYFEFNSKFTDKMRRIKSGIMSFFMQIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDRENANLFRYLA. 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00308 661 SUPERFAMILY Cullin repeat-like 1 293 IPR016159 -
Seca12g00308 661 FunFam Cullin-1, putative 175 297 - -
Seca12g00308 661 SMART Cullin_Nedd8_2 588 655 IPR019559 -
Seca12g00308 661 Gene3D - 577 661 IPR036388 -
Seca12g00308 661 FunFam Cullin-1 like 415 577 - -
Seca12g00308 661 Pfam Cullin family 1 555 IPR001373 GO:0006511|GO:0031625
Seca12g00308 661 Gene3D Cullin; Chain C, Domain 2 415 567 - -
Seca12g00308 661 ProSiteProfiles Cullin family profile. 297 527 IPR016158 -
Seca12g00308 661 SUPERFAMILY "Winged helix" DNA-binding domain 575 661 IPR036390 -
Seca12g00308 661 Pfam Cullin protein neddylation domain 591 653 IPR019559 -
Seca12g00308 661 SUPERFAMILY Cullin homology domain 296 563 IPR036317 -
Seca12g00308 661 Gene3D Cullin Repeats 175 297 - -
Seca12g00308 661 FunFam Cullin-1 like 298 411 - -
Seca12g00308 661 FunFam Cullin-1, putative 50 171 - -
Seca12g00308 661 Gene3D Cullin Repeats 298 411 - -
Seca12g00308 661 Gene3D Cullin Repeats 50 171 - -
Seca12g00308 661 SMART cul_2 328 477 IPR016158 -
Seca12g00308 661 FunFam Cullin-1 578 661 - -
Seca12g00308 661 PANTHER CULLIN 2 656 IPR045093 -
Seca12g00308 661 Gene3D Cullin Repeats 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00308 Seca-Chr12 2785910 2791128 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00308 K03347 - gmx:100793682 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00308 12 2785910 2791128 Seca6g03962 6 107340090 107341074 PCT
Seca6g04639 6 113920002 113936130 Seca12g00308 12 2785910 2791128 PCT