Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04639 ATGAGTTTCATGTCTCTCCTCCCCACCAAACGGTCAGCCGGCGCTCCCTCAGCCTCACCCCCTCCTCCTATGAAAAAGCCCAAGTCCCAGTCCTCTCAAGACGACGCCGTTTTGGTGGACCCTTCCTCTATGCCTCTCGACGACGATCTCAAGCCCGACCTCCCCAATGCTCGCGGCGTCATGGCCGCCAATCTCTCCCGCAAGAAAGCCACTCCTCCCCAGCCTCCTAAGAAGCTCCAAATCAAGCTCCACAAAGCTAAACCGACGTTGCCCACAAATTTTGAAGAGGATACCTGGGCAAAACTAAAGTCTGCTATTTGTGCTATATTTTTGAAGCAACCTGACTCTTGTGACTTGGAGAAGCTCTATCAGGCTGTGAGTGATCTTTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGTACACATATCTGCAGCACTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACATATGTGAAGCAAACAACAAATGTACGGTCATTATGGGATATGGGCTTACAACTTTTCCGCAAACATTTGTCACTGTCTCCTGAAGTACAGCACAAAACTGTTACTGGTCTTCTACGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTAGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTCACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACTTCTGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGTTCCGGATTATTTGAAGCATGTGGAGACAAGATTGCAAGAGGAACAGGACAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAGCAACTTCTTGAACGTCATATATCTGCCATTCTTGACAAGGGTTTCTCTATGCTTATGGATGGGAATCGTATTGAAGATCTTCAGAGAATGTACTCACTCTTTTCAAGGGTCAATGCCCTCGAGTCACTAAGGCAGGCCCTTAGTTCATACATCAGGAGAACTGGGCAGGGCATTGTTATGGATGAGGAGAAAGATAAAGATATGGTTTCATCCCTTCTGGAATTTAAGGCTTCTCTTGACAGAACTTGGGAAGAAAGCTTTTTCAAGAATGAAGCATTCTGTAACACCATTAAAGATGCATTTGAGCATCTTATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAATAAGGGTACTTCAGAAGAGGAGTTGGAGGGTACACTTGATAAAGTCCTGGTTTTGTTCAGGTTCATTCAGGGCAAGGATGTGTTTGAAGCATTCTATAAGAAAGATCTTGCTAAAAGACTGCTGTTAGGAAAGAGTGCTTCAATTGATGCAGAGAAATCTATGATCTCCAAGGTTAAGGCTTATCTTTTCCTTTTAAAATCTGAAATAATTAGAGGGTTCCTCAGTAACAGTTCTCTTTCATTAATACAGTTGAAGACTGAGTGTGGCAGCCAATTCACAAACAAACTAGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAATCATCCCAGGCGAGAACTAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTAACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAACGTTTACCAGGATATTTTCAAGGAATTCTATCTAAGCAAATATAGTGGAAGGCGTCTAATGTGGCAAAATTCTTTAGGTCACTGTGTCCTAAAGGCAGATTTTCCTAAAGGGAAAAAGGAGTTGGCTGTCTCCTTATTTCAGACTGTTGTTCTGATGCTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGCTATTGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGATGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAAGGGTTTACTGCTCCTCTTTACCGTATCAAGGTAAATGCAATTCAGCTGAAGGAGACAGTGGAGGAGAACACGAGCACCACTGAAAGAGTTTTCCAAGACCGTCAATATCAGGTCAATTTTCCTTTCTCAGAAGCTCTTGTTTTAGCTAGACTTAAGAGCACTAATGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCAATAAAACCAGCTGATTTGAAGAAAAGAATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGGGACAAGAACAACCCTCAAATATACAATTACCTGGCATAG 2520 0.419 MSFMSLLPTKRSAGAPSASPPPPMKKPKSQSSQDDAVLVDPSSMPLDDDLKPDLPNARGVMAANLSRKKATPPQPPKKLQIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPDSCDLEKLYQAVSDLCLYKMGGNLYQRIEKECEVHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTTNVRSLWDMGLQLFRKHLSLSPEVQHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRLQEEQDRCLIYLDASTRKPLIATAEKQLLERHISAILDKGFSMLMDGNRIEDLQRMYSLFSRVNALESLRQALSSYIRRTGQGIVMDEEKDKDMVSSLLEFKASLDRTWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKVKAYLFLLKSEIIRGFLSNSSLSLIQLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKADFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTAIEDKELRRTLQSLACGKVRVLQKMPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVNFPFSEALVLARLKSTNVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA. 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04639 839 ProSitePatterns Cullin family signature. 812 839 IPR016157 GO:0006511|GO:0031461|GO:0031625
Seca6g04639 839 SMART cul_2 469 644 IPR016158 -
Seca6g04639 839 Pfam Cullin protein neddylation domain 773 831 IPR019559 -
Seca6g04639 839 Gene3D Cullin; Chain C, Domain 2 580 737 - -
Seca6g04639 839 Gene3D Cullin Repeats 220 334 - -
Seca6g04639 839 Pfam Cullin family 99 722 IPR001373 GO:0006511|GO:0031625
Seca6g04639 839 SUPERFAMILY "Winged helix" DNA-binding domain 773 839 IPR036390 -
Seca6g04639 839 ProSiteProfiles Cullin family profile. 439 694 IPR016158 -
Seca6g04639 839 FunFam Cullin-4 86 217 - -
Seca6g04639 839 FunFam Cullin 4B 768 839 - -
Seca6g04639 839 Gene3D - 768 839 IPR036388 -
Seca6g04639 839 SUPERFAMILY Cullin homology domain 436 732 IPR036317 -
Seca6g04639 839 MobiDBLite consensus disorder prediction 1 56 - -
Seca6g04639 839 PANTHER CULLIN 95 835 IPR045093 -
Seca6g04639 839 FunFam Cullin 4B 336 437 - -
Seca6g04639 839 FunFam Cullin-4 like 580 736 - -
Seca6g04639 839 Gene3D Cullin Repeats 335 437 - -
Seca6g04639 839 SMART Cullin_Nedd8_2 768 833 IPR019559 -
Seca6g04639 839 FunFam Cullin 3 219 335 - -
Seca6g04639 839 SUPERFAMILY Cullin repeat-like 93 435 IPR016159 -
Seca6g04639 839 Gene3D Cullin Repeats 438 575 - -
Seca6g04639 839 Gene3D Cullin Repeats 86 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04639 Seca-Chr6 113920002 113936130 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04639 K10609 - gmx:100805491 1380.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04639 6 113920002 113936130 Seca6g04639 6 113920002 113936130 ECH
Seca6g04639 6 113920002 113936130 Seca12g00308 12 2785910 2791128 PCT