Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g01841 ATGGAGTTCATGGGAGGTGGGAAATTTAGGTTGTACCTTGTTCTTGTGGTCTTTGCTGTACTGTTAGTGGGTCCAGTGGGTGGAATTGGTGTTAATTGGGGCACACAGTCAACACACCCTTTGCCACCATCCACAGTGGTGAAAATGCTAAAAGACAATGGTATTCAGAAAGTTAAGCTTTTTGATGCTGACCCCAATATTTTAGATGCTCTAAAGAAGTCTGGGATTCAGGTGATGGTGGGTATACCAAATGACCTGCTCTATACAATGGCTAACAGTATGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTCTCAGCGCATCTCTCATCTGGAGGAGTAGACATCAGGTACGTGGCAGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTACCTTTGAAGCCACAACACTTCCAGCTCTTCAAAATATCCAAGCAGCTCTTACAAAAGCTGGTCTGGGCAATCAGGTTAGAGTCACATGCCCTTTAAATGCCGATGTCTATGAGAGCTCATCAGATAAACCTTCCGATGGGGACTTCAGGACAGACATCCATGATCTCATGCTGCAGATTGTCAAGTTCTTGGGCCAGAATAATTCTCCATTTACTGTGAACATCTATCCTTTTATCAGCCTTTATGAAGATGCCAATTTTCCTGTTGACTATGCCTTTTTCAATGGCTTTCAGTCTGCTATAAATGACAATGGAAAGATCTATGACAATGTCTTTGATGCTAACCATGATACACTAGTATGGGCATTGCAGAAGAGTGGTTTTGGAAACTTGCCTATAATTTTAGGAGAAGTTGGGTGGCCTACAGATGGAGACAGAAATGCAAATCTTCAGTATGCACAACGTTTTAACCAAGGCTTCATGTCTCGCTATATTGCTGGAAAGGGGACTCCAATGAGACCTGGTCCTATGGATGCATACTTGTTTAGTTTGGTAGATGAAGATAACAAAAGCATTCAGCCAGGTAATTTTGAACGTCATTGGGGGTTGTTTTACTATGATGGAAAGCCCAAATACCAACTCAACATTGGATCAAGAACTAATGGCTTGGTAGGTGCTACTGGTGTAGGATATCTACCCAAAAAGTGGTGTGTTTTGAAACCCTCAGCAAACCTAAATGATGATCAACTGGTACCAAGTGTGTCTTATGCTTGTCAAAATGCAGATTGCACCAGTCTTGGGTATGGAACTTCATGTGGAAATTTAGATGCTCGTGGTAATATCTCTTATGCATTTAATAGCTATTTTCAGGTGAATGACCAGATTGACAGTGCCTGCAAGTTCCCTGGCCTTTCTGTTGTCACTGACAAAGATCCTTCAGTTGGAGATTGCAAATTCAAAATCATGATTGAGACAGATTCTGCTGGCCTATATGGGAATGGAAGAATTGGGTGTCTTAGAATAATGCTCTTTGTATTTTTGTTTTTCACTCTTCTGTAA 1455 0.4144 MEFMGGGKFRLYLVLVVFAVLLVGPVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSMQAAEKWVSKNVSAHLSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQAALTKAGLGNQVRVTCPLNADVYESSSDKPSDGDFRTDIHDLMLQIVKFLGQNNSPFTVNIYPFISLYEDANFPVDYAFFNGFQSAINDNGKIYDNVFDANHDTLVWALQKSGFGNLPIILGEVGWPTDGDRNANLQYAQRFNQGFMSRYIAGKGTPMRPGPMDAYLFSLVDEDNKSIQPGNFERHWGLFYYDGKPKYQLNIGSRTNGLVGATGVGYLPKKWCVLKPSANLNDDQLVPSVSYACQNADCTSLGYGTSCGNLDARGNISYAFNSYFQVNDQIDSACKFPGLSVVTDKDPSVGDCKFKIMIETDSAGLYGNGRIGCLRIMLFVFLFFTLL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g01841 484 Gene3D Glycosidases 28 354 - -
Rops9g01841 484 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Rops9g01841 484 FunFam Glucan endo-1,3-beta-glucosidase 8 363 460 - -
Rops9g01841 484 Pfam X8 domain 367 436 IPR012946 -
Rops9g01841 484 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 440 IPR044965 GO:0004553|GO:0005975
Rops9g01841 484 SMART X8_cls 367 451 IPR012946 -
Rops9g01841 484 FunFam Glucan endo-1,3-beta-glucosidase 5 28 354 - -
Rops9g01841 484 Gene3D - 365 460 - -
Rops9g01841 484 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Rops9g01841 484 Pfam Glycosyl hydrolases family 17 29 347 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g01841 Rops-Chr9 33214978 33219131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g01841 7 460 Glycoside Hydrolase AT4G31140 70.485 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g01841 K19893 - gmx:100790297 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01841 9 33214978 33219131 Rops10g02305 10 40838006 40839839 PCT
Rops10g01473 10 28046406 28050678 Rops9g01841 9 33214978 33219131 PCT