Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02305 ATGGCTCGAGCCAAGTTATCCATGTATGCGCTTTGTTTGATACTGGTCCTAGCTCATTCCAAACTAGAAGGTGCCCAAGGGGCAGAGTCTATATCAGGTCTTGGTGTCAATTGGGGTGCACTAGCATCCCACCCAATGGATCCTAGGATAGTGGTGCAAATGTTGAAGGACAATGGGATCAAGAAGATAAAACTTTTCGATGCAGATTCTTGGACAGTGAGTACTTTTTCTGGTACAGACATTGAAGTCATGGTTGGAATTCCTAATGATCAATTGAATAAACTTGCTGGAAGTAACAGAGATGCAGAAGAATGGGTGAAAAAAAATCTCACCAAACATCTTCATGATGGGGGTGTGAACATCAGATACGTAGCTGTGGGAAATGAGCCATTCTTGAGAAGTTACAACGGTTCATATATAAATACCACATTCCCTGCAATGCAAAATATTGCAAAGGCTATTGATAAGGCTGGTTTTGGAGACAAAGTGAAGGTGACCACGCCTTTGAATGCTGATGTTTATGAGTCTAATTCAAATAGACCATCAGATGGAGTTTTCCGAAATGATATTAATGATGTTATGAAACAAATACTACAATTTCTTCATGAAAGGAATTCACCATTTCTTGTCAACATATACCCTTTTCTTAGTCTCTATGCAAATGAAGCTTTTCCGGAAGATTTTGCATCCTTTGATAGTCAAAGTAGAACACTCGATGACACAAATGCACAAACACAATATAGCAATGTGTTTGATGCAAATTTTGATACCCTTGTTTGGTCATTAAAAAAGGCTGGTTACCCTGACATGAGAATTGTAGTTGGTGAAATTGGATGGCCAACTGATGGTGACAAAAAAGCTAATGACAAAAATGCACAAAGGTTCTACCAAGGGTTCCTTAAGAAAATGGCAAGCAACAAAGGAACCCCACTTCGTCCAGGACCCATGGATGTGTATCTTTTTTCTCTTTTTGATGAGAACTTGAAGGATATTGCACCTGGTAACTTTGAACGTCACTGGGGTATTTTTCGTTATGATGGAAAGCCAAAGTTTCCTATAGATTTTTCTGGTCAGGGAAAAGAGAAATGGCCTGTAGAAGCAAAAGGTGTTCGTTACCAAGAACATAAATGGTGTGTACTCAGGAGTGATGTTAAGGACTTGAGCCAGGTGGGAGATGCATTAAGCTATGCTTGTGCAGGTGCTGATTGTACAAGCTTAGGATATGGTTGTTCATGTGAAAATTTAGACATTGCTGGTAATGCTTCTTATGCTTTCAACCAATACTTTCAGACAAGAGACCAAAGTGTTGAGGCGTGTAATTTCAATGGATTGGCCAATATTGTTACACAGGATCCATCAAAGGGAAGTTGCTTATTCCCTATAGAAATTGAGAGCAGTGGAGACATGCTCAAAGCAATACATACAATGGGAAGCCTTTTTATTGGATTAACATTGTTTTTTATGACATTTGCTTAA 1476 0.3909 MARAKLSMYALCLILVLAHSKLEGAQGAESISGLGVNWGALASHPMDPRIVVQMLKDNGIKKIKLFDADSWTVSTFSGTDIEVMVGIPNDQLNKLAGSNRDAEEWVKKNLTKHLHDGGVNIRYVAVGNEPFLRSYNGSYINTTFPAMQNIAKAIDKAGFGDKVKVTTPLNADVYESNSNRPSDGVFRNDINDVMKQILQFLHERNSPFLVNIYPFLSLYANEAFPEDFASFDSQSRTLDDTNAQTQYSNVFDANFDTLVWSLKKAGYPDMRIVVGEIGWPTDGDKKANDKNAQRFYQGFLKKMASNKGTPLRPGPMDVYLFSLFDENLKDIAPGNFERHWGIFRYDGKPKFPIDFSGQGKEKWPVEAKGVRYQEHKWCVLRSDVKDLSQVGDALSYACAGADCTSLGYGCSCENLDIAGNASYAFNQYFQTRDQSVEACNFNGLANIVTQDPSKGSCLFPIEIESSGDMLKAIHTMGSLFIGLTLFFMTFA* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02305 491 FunFam Glucan endo-1,3-beta-glucosidase 5 33 361 - -
Rops10g02305 491 Pfam X8 domain 376 445 IPR012946 -
Rops10g02305 491 Gene3D Glycosidases 33 362 - -
Rops10g02305 491 Gene3D - 372 467 - -
Rops10g02305 491 FunFam Glucan endo-1,3-beta-glucosidase 8 372 468 - -
Rops10g02305 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 447 IPR044965 GO:0004553|GO:0005975
Rops10g02305 491 SMART X8_cls 376 459 IPR012946 -
Rops10g02305 491 Pfam Glycosyl hydrolases family 17 34 355 IPR000490 GO:0004553|GO:0005975
Rops10g02305 491 ProSitePatterns Glycosyl hydrolases family 17 signature. 270 283 IPR000490 GO:0004553|GO:0005975
Rops10g02305 491 SUPERFAMILY (Trans)glycosidases 34 355 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02305 Rops-Chr10 40838006 40839839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02305 28 468 Miscellaneous Gene Families AT5G64790 55.556 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02305 - - gmx:100794658 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02305 10 40838006 40839839 Rops10g02305 10 40838006 40839839 ECH
Rops9g01841 9 33214978 33219131 Rops10g02305 10 40838006 40839839 PCT