Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01473 ATGGAGTTGATGGGAGGTGCAAAGTTTAGTAGGTGTGTTGTTCTGTTGTTCTTTAACGTTTTTTTAGTGGGTTCAGTGAGTGGAATTGGTGTTAACTGGGGCACACAGTCAACACACCCTTTATCACCCTCCAAGGTGGTGAAAATGCTGAAAGACAATGGCATTCAGAAAGTTAAGCTTTTTGATGCTGATCCAAGCATCTTAAATGCTCTCAAGAAGTCTGGGATTCAGGTGATGGTGGGTATTCCCAATGACATGCTTTATTCTCTTGCTAACAGTGTACAAGTAGCTGAAAAATGGGTTGCCAAGAATGTTTCTGCACATGTCTCTTCTGGTGGAGTAGACATCAGGTACGTTGCTGTGGGGAATGAACCATTCTTATCAACATACAATGGTAGTTTTGAAACCACAACTCTTCCAGCTCTTCAAAATATCCAGGCAGCTCTAACAAAATCTGGTTTGGGCAACAAGGTCAAAGTCACTGTCCCTTTAAATGCTGATGTATATCAAAGCTCATCAGAGAAGCCATCAGATGGTGATTTCAGGCCAGACATAAATGATCTCATGCTTCAGATTGTCAAGTTCTTGAATGACAATGGAGCTGCATTTACTGTGAACATCTACCCTTTTATCAGCCTCTACTCAGATCCCAATTTCCCTGTTGACTATGCTTTTTTCAATGGCAATCAGCAAGCTATAACTGACAATGGAAGAACCTATGACAATGTGTTTGATGCTAACCACGACACTCTAGTATGGGCATTGCAAAAGCATGGTTTTGGAAACTTGCCTATAATTGTTGGAGAAATTGGATGGCCTACAGATGGAGATAGAAATGCAAATCTTCAATATGCACAACGTTTTAACCAAGGTTTTATGTCACGTTATGTTTCTGGTAAGGGAACTCCAATGAGGGCTGGTCCAATAGATGCTTACTTGTTCAGTCTCGTAGATGAAGATAACAAGAGCATTCAACCAGGGAACTTTGAACGTCATTGGGGGTTGTTTTACTTGGATGGGAAGCCCAAATACCAACTTAACCTTGGTTCAAACCATGGCAATGGCTTGGTAGCTGCTAGTGGGGTTGATTATTTGGCCAAAAAGTGGTGTGTTTTGAAACCCTCTGCAAACCTTAATGATAATCAATTGGCACCAAGTGTGGCCTATGCATGTCAAAATGCTGATTGTACCAGTCTTGGATATGGAACTTCATGTGCCGATTTAGATCTTCATGGTAACATCTCATATGCATTTAATAGCTATTATCAGATAAATGACCAGATGGATAGTGCATGCAAATTCCCGGGGCTTTCTATGATTACTGACAAAGATCCTTCTGTTGGAAATTGCAAATTCAGAATCATGATCCAGACAGATTCTGCAGGGCTAAATGGGTCACTTGGGTCTTTAAGAACCATGCTTTGTGTTCTTGTTTTTTTACTATTCTGTAATCTTTCATTTTGA 1464 0.4051 MELMGGAKFSRCVVLLFFNVFLVGSVSGIGVNWGTQSTHPLSPSKVVKMLKDNGIQKVKLFDADPSILNALKKSGIQVMVGIPNDMLYSLANSVQVAEKWVAKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGSFETTTLPALQNIQAALTKSGLGNKVKVTVPLNADVYQSSSEKPSDGDFRPDINDLMLQIVKFLNDNGAAFTVNIYPFISLYSDPNFPVDYAFFNGNQQAITDNGRTYDNVFDANHDTLVWALQKHGFGNLPIIVGEIGWPTDGDRNANLQYAQRFNQGFMSRYVSGKGTPMRAGPIDAYLFSLVDEDNKSIQPGNFERHWGLFYLDGKPKYQLNLGSNHGNGLVAASGVDYLAKKWCVLKPSANLNDNQLAPSVAYACQNADCTSLGYGTSCADLDLHGNISYAFNSYYQINDQMDSACKFPGLSMITDKDPSVGNCKFRIMIQTDSAGLNGSLGSLRTMLCVLVFLLFCNLSF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01473 487 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Rops10g01473 487 FunFam Glucan endo-1,3-beta-glucosidase 5 28 354 - -
Rops10g01473 487 FunFam Glucan endo-1,3-beta-glucosidase 8 364 461 - -
Rops10g01473 487 Gene3D Glycosidases 28 355 - -
Rops10g01473 487 SMART X8_cls 368 452 IPR012946 -
Rops10g01473 487 Gene3D - 364 461 - -
Rops10g01473 487 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 441 IPR044965 GO:0004553|GO:0005975
Rops10g01473 487 Pfam Glycosyl hydrolases family 17 29 347 IPR000490 GO:0004553|GO:0005975
Rops10g01473 487 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
Rops10g01473 487 Pfam X8 domain 368 438 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01473 Rops-Chr10 28046406 28050678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01473 13 483 Glycoside Hydrolase AT4G31140 67.941 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01473 K19893 - gmx:100796552 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01473 10 28046406 28050678 Rops9g01841 9 33214978 33219131 PCT