Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00833 ATGTCGAAACAGACTTACAGTGTCTGCTTCTGTTGGCGGCGGCGGTTCAAGCTGGCCTTGTCTGAGGCACCGCCGGAGATCAAGACCCTTTTCGAACAATACTCGGAAAATGAGATCATGACAGCTTCTCAACTCCAAAGGTTCATGGTTGAAGTGCAGAGGCAAGAGAAAGCAACAGAAGAAGAAGCACAAGCTATCATAGATAGTTTCAAGCATTTTCATCGTAGGGGTGTGGGACTAAATCTTGAAACTTTCTTCAAGTACCTCGTCAGTGACGATAATCCACCTCTTCAACCTTCTCTTGGGGTGCACCATGATATGACTTTACCCATGTCTCATTATTTCATATATACTGGACATAATTCCTATCTAACCGGGAATCAGCTGAGTAGCGACTGCAGTGATGTCCCTATCATAAATGCACTGAAGAGAGGTGTAAGGGTGATTGAATTGGACATATGGCCTAATGCATCAAAGGATAATGTCGATGTTCTTCATGGAAGGACATTGACTACTCCTGTAGAGCTCATCAGATGTTTGAGGTCTATTAAGGAACATGCCTTTGTCGCGTCAGAATATCCAGTTGTGATAACACTAGAAGACCACCTTACTCCGGATCTTCAGGCTAAAGTGGCTGAGATGGTTATTCAAACATTTGGAGACATACTATTTTCTCCTAGCTCAGAAGAAAGCTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAAGGAGGATTATCATATCAACCAAACCACCTAAGGAGTACCTTGAGGTAAAAGAAAAGGAAAAAGGAGACGATTCACAGCAGGGAAAGTCTTCAGGCGATGACGAAGCTTGGGGGAAGGAAGTCCCAATCTTGAGAGGTGATTCTATAGCTGATTACAAGGAAAGCAATGTGGATAAAGAAGATGGTAAAGATGAGGAAGATCTTGACGAAGCAGATAAGTCGAATCATAATGAAGCTCCAGAATATAGACGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGAGTGCAGGAGTGGCTCAAAGTAGATCCTGATAAAGTGAGACGTTTAAGTTTGAGTGAGCAGCAGCTTGAAAAGTTTGCTATAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGAGGAATATACTGAGGGTGTATCCTAAAGGTACTCGCATTGACTCGTCAAATTATAACCCCTTAATTGGATGGATGCATGGAGCTCAAATGGTTGCATTTAACATGCAGGGGTATGGGAGATCACTTTGGTTGATGCATGGAATGTTCAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGAATTTCTATTAAAGAGTGGTCCGGATAATGAGGTCTTCGATCCTAAAGCTAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGAGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATACTCACCTCCAGATTTCTATGCAAGAGTGGGGATTGCTGGAGTCCCTAATGATACTATAATGAGAAAAACTAGAGCAATAGAGGATAATTGGTTACCTGCATGGAATGAGGTATTCGAGTTCCCACTTACTGTTCCTGAATTGGCCCTGCTTCGTATAGAAGTTCATGAGTATGACATGTCTGAAAAAGATGACTTTGGTGGCCAAACATGCCTACCTGTTTGGGATCTAAGAAGTGGCATTCGAGCTGTACCCCTTCATAGCCAAAAAGGAGATAAATACAACTCTGTAAAGCTTCTTATGCGCTTTGAATTTTATTGA 1770 0.4175 MSKQTYSVCFCWRRRFKLALSEAPPEIKTLFEQYSENEIMTASQLQRFMVEVQRQEKATEEEAQAIIDSFKHFHRRGVGLNLETFFKYLVSDDNPPLQPSLGVHHDMTLPMSHYFIYTGHNSYLTGNQLSSDCSDVPIINALKRGVRVIELDIWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMVIQTFGDILFSPSSEESLKEFPSPESLKRRIIISTKPPKEYLEVKEKEKGDDSQQGKSSGDDEAWGKEVPILRGDSIADYKESNVDKEDGKDEEDLDEADKSNHNEAPEYRRLIAIHAGKPKGGVQEWLKVDPDKVRRLSLSEQQLEKFAITHGKEIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPEFLLKSGPDNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPNDTIMRKTRAIEDNWLPAWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVWDLRSGIRAVPLHSQKGDKYNSVKLLMRFEFY* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00833 589 SMART plcx_3 105 250 IPR000909 -
Rops9g00833 589 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 454 IPR017946 GO:0006629|GO:0008081
Rops9g00833 589 PRINTS Phospholipase C signature 555 565 IPR001192 GO:0035556
Rops9g00833 589 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Rops9g00833 589 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Rops9g00833 589 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Rops9g00833 589 PRINTS Phospholipase C signature 234 251 IPR001192 GO:0035556
Rops9g00833 589 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Rops9g00833 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 250 - -
Rops9g00833 589 Gene3D C2 domain 456 589 IPR035892 -
Rops9g00833 589 FunFam Phosphoinositide phospholipase C 456 589 - -
Rops9g00833 589 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops9g00833 589 SMART C2_3c 461 569 IPR000008 -
Rops9g00833 589 Pfam C2 domain 462 562 IPR000008 -
Rops9g00833 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops9g00833 589 Gene3D - 22 100 - -
Rops9g00833 589 SUPERFAMILY EF-hand 24 99 IPR011992 -
Rops9g00833 589 CDD C2_PLC_like 459 589 - -
Rops9g00833 589 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 94 IPR015359 -
Rops9g00833 589 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 588 IPR001192 GO:0035556
Rops9g00833 589 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 250 IPR000909 -
Rops9g00833 589 SUPERFAMILY PLC-like phosphodiesterases 105 442 IPR017946 GO:0006629|GO:0008081
Rops9g00833 589 SMART plcy_3 324 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops9g00833 589 ProSiteProfiles C2 domain profile. 442 571 IPR000008 -
Rops9g00833 589 CDD PI-PLCc_plant 104 428 - -
Rops9g00833 589 MobiDBLite consensus disorder prediction 256 322 - -
Rops9g00833 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 588 IPR035892 -
Rops9g00833 589 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00833 Rops-Chr9 12891846 12897127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00833 1 588 Acyl Lipid Metabolism Gene Families AT3G55940 69.036 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00833 K05857 - gmx:100037460 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03956 11 73746380 73750916 Rops9g00833 9 12891846 12897127 ECH
Rops9g01286 9 21385808 21390397 Rops9g00833 9 12891846 12897127 ECH
Rops9g00833 9 12891846 12897127 Rops9g00833 9 12891846 12897127 ECH
Rops11g03956 11 73746380 73750916 Rops9g00833 9 12891846 12897127 PCT