Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03956 ATGTCTAAACAGACTTATAGCTTTTGCTTTTGCTGCCGGCGGCGGTTCAAGCTGACCGTGTCGGAGGCGCCACCGGAGATAAGGACCCTTTTCCAGCACTACTCTGATGAGAATGGAATCATGACAGCTTCTCACCTCCGCAGTTTCCTGGTTGAGGTTCAGAGACAAGAGAAGACCACAGAAGAGGAAACACAAGCAATCATCGATGGGCACAAGCATTTGAGTATCTTTCACCGAAGGGGTCTCAATCTCGAGAGTTTCTTCCAGTATCTCTTCAGTGACAATAACCCCCCTCTCTTACCTTCTCTTGGGGTGCACCAAGATATGTCTTTACCGTTGTCTCATTATTTCATACATACTGGTCATAATTCCTATCTAACTGGAAATCAGCTTAGCAGTGACTGCAGTGACGCCCCCATCATCAGTGCACTGCAGAAAGGTGTAAGGGTGATTGAATTAGATATATGGCCTAATGCATCAAAGGATAATGTAGATGTTCTTCACGGAAGGACGTTGACTACTCCTGTAGCTCTCATAAAATGTTTGAGGTCTATTAAGGAGTATGCCTTTGTTGCATCAGAATATCCAGTTGTAATAACCTTAGAAGACCACCTTACTCCTGATCTTCAGGCCAAAGTGGCTGAGATGGTTAAGCAAACATTTGGAGACATACTATTTTGTCCTGGCTCAGAAAGCATTAAGGAATTCCCTTCTCCTGAATCACTTAAAAGAAGGATTATCATATCAACCAAACCACCAAAGGAGTACCTTGAGGCAAAAGACGAAGGGGAAAAGGAGGAACCACAGAAGGGAAAGCCTTCAGATGATGAAGAAGCATGGGGGAAGGAAGTCCCTAGTTTGAGAGGTGGTACTATAACTGATTACAAGGACAGTGGAGATGAAGATGATGATAATGATGAGGATGATCTAGATGAAGCAGATAAGTCTCGTCAAAATGTATCAGATGAATACAGAAGTTTAATTGCAATTCATGCGGGGAAGCCTAAAGGTGGATTAGAGGAATGTCTCAAAGTGGATCCTGATAACGTGAGACGTCTAAGTTTAAGTGAGCTGCAGCTTGAAAAGGCTGCTGTAACTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATACTGAGGGTGTATCCAAAAGGAACACGCATTACGTCGTCAAATTATAACCCATTAATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGGAGATCTCTTTGGCTGATGCATGGAATGTTCAAAGCCAATGGCAGATGCGGTTACGTTAAAAAACCAGATTTTCTGTTAAAAGCCGGTCCCAATAATGAGGTCTTTGATCCTCAAGCTCATTTGCCCGTGAAGACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATCATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGATTTCTATGCAAGGGTGGGGATTGCTGGAGTCCCTAATGATACTAATATGAAAAAAACAAAGACAAAAGAGGATAATTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCCCACTTACTGTTCCAGAATTGGCTCTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGGCAAACATGCTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCAGTTCCACTTCATTCCCGCAAAGGAGATAAGTACAACAATGTAAAGCTTCTCATGCGCTTTGAATTCATCTGA 1770 0.4294 MSKQTYSFCFCCRRRFKLTVSEAPPEIRTLFQHYSDENGIMTASHLRSFLVEVQRQEKTTEEETQAIIDGHKHLSIFHRRGLNLESFFQYLFSDNNPPLLPSLGVHQDMSLPLSHYFIHTGHNSYLTGNQLSSDCSDAPIISALQKGVRVIELDIWPNASKDNVDVLHGRTLTTPVALIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAEMVKQTFGDILFCPGSESIKEFPSPESLKRRIIISTKPPKEYLEAKDEGEKEEPQKGKPSDDEEAWGKEVPSLRGGTITDYKDSGDEDDDNDEDDLDEADKSRQNVSDEYRSLIAIHAGKPKGGLEECLKVDPDNVRRLSLSELQLEKAAVTHGKEIVRFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFKANGRCGYVKKPDFLLKAGPNNEVFDPQAHLPVKTTLKVTVYMGEGWYHDFKHTHFDQFSPPDFYARVGIAGVPNDTNMKKTKTKEDNWLPSWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLHSRKGDKYNNVKLLMRFEFI* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03956 589 Gene3D Phosphatidylinositol (PI) phosphodiesterase 103 454 IPR017946 GO:0006629|GO:0008081
Rops11g03956 589 MobiDBLite consensus disorder prediction 253 318 - -
Rops11g03956 589 Gene3D C2 domain 456 589 IPR035892 -
Rops11g03956 589 SUPERFAMILY PLC-like phosphodiesterases 107 442 IPR017946 GO:0006629|GO:0008081
Rops11g03956 589 CDD PI-PLCc_plant 106 428 - -
Rops11g03956 589 FunFam Phosphoinositide phospholipase C 456 589 - -
Rops11g03956 589 MobiDBLite consensus disorder prediction 297 311 - -
Rops11g03956 589 Pfam Phosphatidylinositol-specific phospholipase C, X domain 109 251 IPR000909 -
Rops11g03956 589 SUPERFAMILY EF-hand 23 109 IPR011992 -
Rops11g03956 589 CDD C2_PLC_like 459 588 - -
Rops11g03956 589 MobiDBLite consensus disorder prediction 253 283 - -
Rops11g03956 589 ProSiteProfiles C2 domain profile. 442 571 IPR000008 -
Rops11g03956 589 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g03956 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g03956 589 SMART C2_3c 461 569 IPR000008 -
Rops11g03956 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 588 IPR035892 -
Rops11g03956 589 PRINTS Phospholipase C signature 235 252 IPR001192 GO:0035556
Rops11g03956 589 PRINTS Phospholipase C signature 555 565 IPR001192 GO:0035556
Rops11g03956 589 PRINTS Phospholipase C signature 138 158 IPR001192 GO:0035556
Rops11g03956 589 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Rops11g03956 589 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Rops11g03956 589 PRINTS Phospholipase C signature 112 130 IPR001192 GO:0035556
Rops11g03956 589 SMART plcx_3 107 251 IPR000909 -
Rops11g03956 589 SMART plcy_3 324 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g03956 589 Pfam C2 domain 461 562 IPR000008 -
Rops11g03956 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 107 251 - -
Rops11g03956 589 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 588 IPR001192 GO:0035556
Rops11g03956 589 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 95 IPR015359 -
Rops11g03956 589 Gene3D - 22 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03956 Rops-Chr11 73746380 73750916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03956 1 589 Acyl Lipid Metabolism Gene Families AT3G55940 68.855 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03956 K05857 - gmx:100784534 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03956 11 73746380 73750916 Rops9g00833 9 12891846 12897127 ECH
Rops9g01286 9 21385808 21390397 Rops11g03956 11 73746380 73750916 ECH
Rops11g03956 11 73746380 73750916 Rops11g03956 11 73746380 73750916 ECH
Rops11g03956 11 73746380 73750916 Rops9g00833 9 12891846 12897127 PCT