Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03427 ATGGATCGTCTTTCTTCCACTACTATTATCCCCGATACATTTCAAGGGGCCAAATATGACATTACCATGCAGTTTGCGTTGATTTGGAATCAAATCAAAGCACCATTGATTGTCCCGTTACTGAGAATAACAGTGGTTTTGTGCTTGATCATGTCTGTGATGATGTTGATTGAGAGGGTTTACATGGGCATTGTCATTACTTTGTTGAAGTTCTTTGGCAGAAAGCCAGAGAAACGTTACAAATGGGAGCCAATGAAGGATGACATAGAGTTGGGAAACTCTTCTTACCCAATGGTCCTTGTTCAAGTCCCTATGTACAATGAAAGAGAGGTTTATCAGCTTTCAATTGGAGCTGCATGTGGTCTTTCTTGGCCTTCAGATAGGATCATCATACAAGTTCTTGATGACTCAACTGACCTAACAATCAAGGAGGCAGTGCAGCTTGAATGCCAAAGATGGGCAAGCAAAGGTGTGAACATAAAGTATGAGGTTAGGGACAACAGGAATGGATACAAAGCAGGGGCTCTAAAAGAAGGCATGAAGCGCAGCTACGGGAAACAATGCGATTATGTTGCCATCTTTGACGCTGATTTTCAGCCTGAGCCTGATTTCTTGTGGCGCACCATTCCATTCCTGGTGCATAATCCTGAACTAGCCCTCATTCAGGCTCGGTGGAAATTTGTGAATGCGGATGAATGTTTAATGACCAGAATGCAAGAGATGTCACTGGATTACCATTTTACTGTGGAACAAGAAGTGGGGTCTTCCACTTACGCCTTCTTTGGCTTCAATGGGACTGCGGGAGTATGGAGAATTTCGGCGCTGAATGAGGCTGGTGGGTGGAAAGATAGGACCACAGTGGAAGATATGGACCTGGCTGTTCGAGCTAGTCTCAAAGGATGGAAATTCTTATACTTGTCTAACTTGAAGGTTAAAAATGAGTTGCCAAGTACTTTCAAAGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGGCCAGCCAATCTTTTCAAGAAAATGGTCATGGAGATCATAAGAAACAAGAAAGTGTCACTGTGGAAGAAGATACATGTGATCTACAGCTTCTTCTTCGTTCGGAAGGTAGTAGCACACATCAACACGTTTGTGTTTTACTGCATTGTTTTACCTGCAACAGTTTTGGTGCCTGAGGTTGCGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCTATCATCACCCTTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTATTGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACGATTATCGGTCTACTAGAGGCTAATCGAGTGAATGAATGGATTGTCACTGAAAAACTTGGAGATGCTCTCAAGGCTAAAGCAGGAGGTAAAGCACCTAAGAAGCCTCGATTCAGGATTGGAGACAGGATTCACTTGTTAGAACTTGGCGTCGGATTCTACCTCTTCTTTTGTGGCTGCTACGATGCTATGTTTGGGAAAAACCACTTCTTCATCTACCTCTTTGTCCAAGCATTTGCTTTCTTCGTCATGGCATTTGGATATGCTGGCGTCTTTGTTCCCAACTCCTAG 1602 0.4388 MDRLSSTTIIPDTFQGAKYDITMQFALIWNQIKAPLIVPLLRITVVLCLIMSVMMLIERVYMGIVITLLKFFGRKPEKRYKWEPMKDDIELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDLTIKEAVQLECQRWASKGVNIKYEVRDNRNGYKAGALKEGMKRSYGKQCDYVAIFDADFQPEPDFLWRTIPFLVHNPELALIQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLKVKNELPSTFKAYRYQQHRWSCGPANLFKKMVMEIIRNKKVSLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVLVPEVAVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENVMSLHRTKATIIGLLEANRVNEWIVTEKLGDALKAKAGGKAPKKPRFRIGDRIHLLELGVGFYLFFCGCYDAMFGKNHFFIYLFVQAFAFFVMAFGYAGVFVPNS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03427 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 312 IPR029044 -
Rops8g03427 533 Pfam Glycosyl transferase family group 2 190 387 IPR001173 -
Rops8g03427 533 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 18 527 - -
Rops8g03427 533 FunFam Glucomannan 4-beta-mannosyltransferase 9 88 316 - -
Rops8g03427 533 CDD CESA_CaSu_A2 97 333 - -
Rops8g03427 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 373 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03427 Rops-Chr8 73408589 73414292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03427 1 532 Miscellaneous Gene Families AT5G03760 79.925 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03427 K13680 - gmx:100810016 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03427 8 73408589 73414292 Rops3g01044 3 13766952 13772659 ECH
Rops8g03427 8 73408589 73414292 Rops8g03427 8 73408589 73414292 ECH
Rops8g03427 8 73408589 73414292 Rops6g00921 6 22564117 22570295 PCT