Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01044 ATGGTTGATTCCCAACCCACTAAGGTTTTCATACCAGATTCATTTCCTAGTGTGAATTATGATGTGGCTGGACAGATTATGATGATTTGGGATGTGATCAAAGCGCCATTGATTGTGCCTCTTTTGAATGTTGCTGTTTACATTTGTTTAGCAATGGCTCTTATGCTCTTCATGGAAAGGGTCTACATGGGTATTGTCATTATCCTTGTTAAGCTCTTTTGGAAGAAACCAGAACAACGTTACAAGTATGAGCCTCTTCAAGATGATGAGGAACTGGGAGGCTCTAATTTCCCAGTGGTTCTTATACAAATTCCAATGTTCAATGAAAAAGAGGTTTACAAGGTCTCCATTGGAGCAGCTTGTGGGCTTTCATGGCCTGCAGACCGTCTCGTGATCCAAGTTCTAGATGATTCTACTGACCCTGTCATCAAGCAAATGGTGGAGATGGAATGCCAGAGATGGGCAAGTAAAGGCATCAACATAGTTTACCAAATCAGAGAGAACAGAACGGGTTACAAAGCTGGTGCTTTGAAAGAAGGCCTAAAACGCAGCTATGTGAAACACTGTGAGTATGTAGCCATTTTTGATGCAGATTTCCGGCCAGAACCAGATTTTCTGAGGAGAGCCATTCCTTTCTTGGTGGGCAATCCTGACATTGCACTTGTTCAAGCTCGTTGGAGATTTGTGAATGCTAATGAATGTTTGTTAACAAGAATGCAAGAGATGTCCCTTGATTACCATTTCAAAGTGGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAATGGGACTGCTGGTATTTGGAGAATAGCTGCTATCAATGAAGCAGGAGGGTGGAAAGACAGAACAACAGTGGAAGACATGGACCTTGCTGTTCGTGCCAGTCTTAGGGGATGGAAATTTTTGTATCTTGGTGACCTTCAGGCTAAAAGTGAGCTTCCTAGTACCTTGAGAGCCTTCAGATTCCAGCAGCATCGATGGTCTTGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAAATAGTGAGGAACAAGAAAGTGAAGTTTTGGAAGAAAGTGTATGTTATATACAGCTTCTTCCTTGTTCGTAAAATCACAGCTCACATGGTCACCTTCTTCTTCTACTGTGTGGTGATTCCCCTAACAATTTTGGTCCCTGAGGTTCATGTTCCAATATGGGGTGCTGTTTATATTCCTTCCATCATCACTATTCTCAATTCAGTTGGAACACCAAGGTCCATTCACCTTTTGTTCTACTGGATCCTTTTTGAGAATGTGATGTCTTTGCATCGTACCAAGGCAACCTTCATAGGTCTGCTAGAATATGGGAGGGCCAATGAATGGGTTGTGACTGAAAAACTTGGAGATTCTGTCAACAATAAGAATAAATCAGGAGATGCTGCCAAGAAGACTGTTGTTAAAGCCCTCAAAAAAACTAGATCCAAATTTGTTGAAAGACTTAATTTGCTGGAGCTGGGATTTGCAGCCTTCCTCTTCCTCTGTGGATGCTATGATTTTGTGCATGGGAAACACAACTACTTTATTTACCTCTTCCTTCAGACCTTAACCTTCTCAATTGTAGGATTTGGCTATGTTGGTACCATCGTGTAA 1623 0.4202 MVDSQPTKVFIPDSFPSVNYDVAGQIMMIWDVIKAPLIVPLLNVAVYICLAMALMLFMERVYMGIVIILVKLFWKKPEQRYKYEPLQDDEELGGSNFPVVLIQIPMFNEKEVYKVSIGAACGLSWPADRLVIQVLDDSTDPVIKQMVEMECQRWASKGINIVYQIRENRTGYKAGALKEGLKRSYVKHCEYVAIFDADFRPEPDFLRRAIPFLVGNPDIALVQARWRFVNANECLLTRMQEMSLDYHFKVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFLVRKITAHMVTFFFYCVVIPLTILVPEVHVPIWGAVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATFIGLLEYGRANEWVVTEKLGDSVNNKNKSGDAAKKTVVKALKKTRSKFVERLNLLELGFAAFLFLCGCYDFVHGKHNYFIYLFLQTLTFSIVGFGYVGTIV* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01044 540 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 23 538 - -
Rops3g01044 540 Pfam Glycosyl transferase family group 2 191 382 IPR001173 -
Rops3g01044 540 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 317 IPR029044 -
Rops3g01044 540 FunFam Glucomannan 4-beta-mannosyltransferase 9 89 317 - -
Rops3g01044 540 SUPERFAMILY Nucleotide-diphospho-sugar transferases 95 377 IPR029044 -
Rops3g01044 540 CDD CESA_CaSu_A2 98 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01044 Rops-Chr3 13766952 13772659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01044 2 540 Miscellaneous Gene Families AT5G22740 80.407 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01044 K13680 - gmx:100802752 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01044 3 13766952 13772659 Rops3g01044 3 13766952 13772659 ECH
Rops8g03427 8 73408589 73414292 Rops3g01044 3 13766952 13772659 ECH
Rops6g00921 6 22564117 22570295 Rops3g01044 3 13766952 13772659 ECH