Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00921 ATGGAAGCGTTTCAAGGTGCCAGAGATGACCTTGCCTTTCAACTTGGGTTGATTTGGAGCCAAATCAGAGAGCCACTGATCGTGCCTTTGCTGAGAGTGGCAGTGTTTTTGTGCCTTGGCATGTCATTGATGATGTTTGTTGAGAGGGTTTACATGGGCATTGTCATTATTTTGGTCAAGCTCTTTTGCAGAAAACCAGAGAAACGTTACAAATGGGAGCCTATGAAGGATGATGTAGAGTTGGGAAACTCTACTTACCCAATGGTTCTTGTCCAAGTCCCAATGTACAATGAAAGAGAGGTTTATCAGCTATCCATTGGTGCTGCATGTGGACTTTCTTGGCCTTCAGATAGGATCATCATACAAATTCTTGATGATTCCACTGACCCAACAATCAAGGAGTTGGTGCAGCTTGAATGCAGTAGATGGAGAAGCAAAGGCGTGAACATAAAGTATGAAGTTAGGGACAATAGAAATGGGTACAAAGCAGGGGCTCTCAAGGAAGGAATGAAGCACAGTTACGTGAAACAATGTGATTATGTTGCCATATTTGATGCTGATTTTCAACCAGAACCTGATTTTCTCTGGCGCACTATCCCATTCCTTGTCAACAATCCTGAACTTGCTCTTGTTCAAGCACGCTGGAAGTTTGTGAATGCCAATGAGTGTTTGATGACAAGGATGCAAGAGATGTCACTGGATTACCATTTTACAGTGGAACAAGAAGTGGGGTCTTCTACTTATGCCTTCTTTGGCTTCAATGGAACTGCTGGTGTATGGAGAATTTCAGCAATGAATGAAGCTGGTGGGTGGAAGGATAGGACCACAGTTGAAGATATGGACCTGGCTGTAAGAGCTAGTCTCAAAGGATGGAAATTCTTATACCTGGCCAATTTAAAGGTTAAAAACGAATTGCCAAGTACTTTAAAGGCCTACCGTTACCAACAGCACAGGTGGTCTTGCGGGCCAGCCAATCTGTTCAAGAAAATGGTCATGGAAATTATTAGAAACAAGAAAGTGACTTTGTGGAAGAAGATACATGTGATCTACAGTTTTTTCTTTGTTCGGAAGGTTGTGGCCCACATCAACACGTTTGTGTTCTATTGCATTGTATTACCTGCAACAGTTGTGGTGCCAGAGGTTGCTGTCCCCAAGTGGGGTGCTGTGTATATCCCTTCCATCATCACCCTTCTAAATGCAGTTGGAACTCCAAGGTCACTCCATTTATTGGTCTTCTGGATTCTTTTTGAGAATACCATGGCTCTGCATAGAACAAAAGCAACAGTTATTGGTCTACTAGAGGCTAGTCGAGTGAATGAATGGATTGTCACCGAAAAACTTGGAGATGCTCTCAAGGGTAAAGGAGGTGGTAAAGCACCAAAGAAGCTCCGATTTAGGATTGGAGACAGGATTCACATGTTGGAACTTCTTGTTGGATTCTACCTCGTCTTCTGTGGCTGCTATGATCTTATGTTTGGGAAAAACCACTTCTTCATATTCCTATATATCCAAGCATTTGCTTTCTTCATCATGGCATTTGGATATGTTGGCACTTTTGTTCCCAACCCCTAG 1572 0.4281 MEAFQGARDDLAFQLGLIWSQIREPLIVPLLRVAVFLCLGMSLMMFVERVYMGIVIILVKLFCRKPEKRYKWEPMKDDVELGNSTYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQILDDSTDPTIKELVQLECSRWRSKGVNIKYEVRDNRNGYKAGALKEGMKHSYVKQCDYVAIFDADFQPEPDFLWRTIPFLVNNPELALVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRISAMNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLANLKVKNELPSTLKAYRYQQHRWSCGPANLFKKMVMEIIRNKKVTLWKKIHVIYSFFFVRKVVAHINTFVFYCIVLPATVVVPEVAVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMALHRTKATVIGLLEASRVNEWIVTEKLGDALKGKGGGKAPKKLRFRIGDRIHMLELLVGFYLVFCGCYDLMFGKNHFFIFLYIQAFAFFIMAFGYVGTFVPNP* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00921 523 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 363 IPR029044 -
Rops6g00921 523 FunFam Glucomannan 4-beta-mannosyltransferase 9 78 306 - -
Rops6g00921 523 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 14 518 - -
Rops6g00921 523 Pfam Glycosyl transferase family group 2 180 378 IPR001173 -
Rops6g00921 523 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 302 IPR029044 -
Rops6g00921 523 CDD CESA_CaSu_A2 87 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00921 Rops-Chr6 22564117 22570295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00921 2 522 Miscellaneous Gene Families AT5G03760 79.502 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00921 K13680 - gmx:100810016 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00921 6 22564117 22570295 Rops3g01044 3 13766952 13772659 ECH
Rops6g00921 6 22564117 22570295 Rops6g00921 6 22564117 22570295 ECH
Rops8g03427 8 73408589 73414292 Rops6g00921 6 22564117 22570295 PCT