Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02875 ATGCAGAGGCCTCCACCAGACGATTTTCTGTTGAAGGAGACCAATCCCCACCTTGGAGGGGGGAGGGTCTCTGGTGATAAGCTTACAAGCACTTATGATCTTGTTGAGCAAATGCAGTACCTTTATGTGAGAGTTGTGAAGGCTAAGGAGTTACCTGCAAAGGATGTCACTGGCAGTTGTGACCCTTATGTTGAAGTCAAGCTGGGAAACTACAAAGGAACCACTAGACACTTTGAGAAGAAGACTAATCCTGAATGGAACCAGGTTTTTGCTTTCTCGAAGGACCGGATTCAGGCTTCCACGCTTGAGGTTACTGTGAAAGATAAGGATGTTGTAAAGGATGACTTCATTGGTCGTGTCTGGTTTGATCTCAATGAGATCCCGAAGAGGGTTCCACCGGATAGCCCTCTGGCACCACAATGGTATAGGCTGGAGGATAGAAAGAATGATAAGGCAAGGGGGGAGCTAATGCTGGCTGTTTGGATGGGTACACAAGCTGATGAAGCTTTTCCCGAAGCATGGCACTCGGATGCCGCAACTATTAGTGGGACTGATGCTCTTGCAAACATTAGATCAAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTAATAGAGGCACAAGACTTGATGCCAACTGACAAGGGGAGATACCCTGAGGTTTTTGTGAAGGCTATTTTGGGAAATCAGACCTTGAGAAGTAGAATCTCTCAGAGCAGGACTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTGGCAGCAGAACCATTTGAGGAGCCCTTGATTTTGAGTGTGGAAGACAGAGTTGCCCCTAACAAAGAGGAAACATTGGGGAGGTGTGCAATTCCTTTACAGCTACTGGAACGGAGGCTTGATCACAAACCTGTGAACACTAGGTGGTTTAATCTTGAAAAGCATGTTGTTATCATGGAAGGGGAAAAGAAGAAGGAAATCAAGTTCGCAAGCAGGATTCATATGAGGATCTGTCTAGAAGGTGGTTATCACGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACAGCTAAACAGCTGTGGAAGTCCAGTATTGGAGTTCTTGAATTGGGGATATTGAATGCTCAGGGTTTGATGCCAATGAAAAACAAAGATGGGAGGGGGACAACAGATGCATATTGTGTAGCAAAATATGGGCAGAAATGGGTCCGAACAAGGACCATCATTGATAGCTTTACACCAAGGTGGAACGAGCAATATACATGGGAGGTTTTTGATCCTTGTACTGCCATTACAATTGGTGTATTTGATAACTGTCATTTGCATGGTGGTGATAAGGGTCCGGGGGCAAGAGATTCAAGAATTGGGAAGGTACGAATTCGTCTTTCCACCCTTGAGACTGATCGAGTCTATACTCATTCCTACCCACTTCTGGTTCTTCATCCAAATGGGGTGAAGAAAACGGGTGAAATTCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAATATGATGCACATGTATTCACAACCCTTGTTGCCCAAGATGCATTATATTCACCCATTGACTGTCAGCCAGCTTGACATTTTGAGGCATCAAGCTACTCAGATCGTTTCAATGAGACTGAGCCGTGCCGAGCCACCATTGAGAAAGGAGATAGTGGAATATATGCTGGATGTTGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCCAACTTTTTCAGGATTATGGGAGTTTTGGGTGGACTAATTGCTGTAGGAAAATGGTTTGATCAGATTTGCCATTGGAAAAACCCCATCACAACAGTTCTGATCCATATCCTGTTTATAATATTAGTAATGTACCCTGAACTTATCTTACCAACAATATTCCTTTATCTCTTCTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGGCACCCTCCTCACATGGACACGCGACTCTCACATGCAGATTCTGCACACCCTGATGAACTAGATGAAGAATTTGACACATTCCCAACCACAAGACCTTCTGACATTGTGAGGATGAGATATGACAGACTTAGAAGTATCGCTGGGAGGATACAAACTGTGGTTGGTGATTTGGCCACTCAAGGGGAAAGGCTTCAATCTTTACTAAGCTGGAGAGATCCAAGAGCTACTGCCCTCTTTGTGATTTTCTGTTTGGTTGCTGCCATTGTTCTCTATGTCACTCCATTCCAAGTTGTGGCTCTTCTGACTGGAATTTATGTATTGAGACATCCAAGGTTCAGGCACAAACTTCCTTCAGCGCCACTGAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2328 0.4424 MQRPPPDDFLLKETNPHLGGGRVSGDKLTSTYDLVEQMQYLYVRVVKAKELPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASTLEVTVKDKDVVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKNDKARGELMLAVWMGTQADEAFPEAWHSDAATISGTDALANIRSKVYLSPKLWYLRVNVIEAQDLMPTDKGRYPEVFVKAILGNQTLRSRISQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEETLGRCAIPLQLLERRLDHKPVNTRWFNLEKHVVIMEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKNKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPRWNEQYTWEVFDPCTAITIGVFDNCHLHGGDKGPGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKTGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYIHPLTVSQLDILRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICHWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSAPLNFFRRLPARTDCML* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02875 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Rops8g02875 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 504 IPR035892 -
Rops8g02875 775 CDD C2D_MCTP_PRT_plant 365 492 IPR047255 -
Rops8g02875 775 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 7 775 IPR047259 -
Rops8g02875 775 FunFam C2 domain-containing protein 188 334 - -
Rops8g02875 775 FunFam C2 domain-containing protein 35 179 - -
Rops8g02875 775 Gene3D C2 domain 188 333 IPR035892 -
Rops8g02875 775 ProSiteProfiles C2 domain profile. 347 473 IPR000008 -
Rops8g02875 775 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Rops8g02875 775 Pfam C2 domain 40 133 IPR000008 -
Rops8g02875 775 Pfam C2 domain 201 307 IPR000008 -
Rops8g02875 775 Pfam C2 domain 365 475 IPR000008 -
Rops8g02875 775 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Rops8g02875 775 FunFam C2 domain-containing protein 347 499 - -
Rops8g02875 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
Rops8g02875 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Rops8g02875 775 SMART C2_3c 202 300 IPR000008 -
Rops8g02875 775 SMART C2_3c 40 136 IPR000008 -
Rops8g02875 775 SMART C2_3c 365 472 IPR000008 -
Rops8g02875 775 Gene3D C2 domain 39 161 IPR035892 -
Rops8g02875 775 MobiDBLite consensus disorder prediction 1 23 - -
Rops8g02875 775 CDD C2C_MCTP_PRT_plant 202 353 IPR047258 -
Rops8g02875 775 CDD C2B_MCTP_PRT_plant 40 164 IPR047257 -
Rops8g02875 775 Gene3D C2 domain 341 497 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02875 Rops-Chr8 64712770 64716367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02875 1 775 Lipid Metabolism Gene Families AT3G57880 90.581 0.0 1483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02875 - - gmx:100818371 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02875 8 64712770 64716367 Rops7g01948 7 32275236 32278436 ECH
Rops8g02875 8 64712770 64716367 Rops8g02875 8 64712770 64716367 ECH
Rops8g02875 8 64712770 64716367 Rops6g00666 6 17117234 17120931 PCT