Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01196 ATGGCAACAACAGCAACAACAAAATGGCATGCAGTTGTGACAGGAGCAAACAAAGGGATAGGATTTGGGATATGTAAGCAATTGGCTTCTAATGGGATCACAGTGGTGCTAACTGCAAGAGATGAGAAAAGGGGTCTTGAAGCTGTTGAAAAACTCAGGGAGTTTGGTCTCTCTGACCATGTGATTTTTCATCAGCTTGATGTCACTGACCCTAATAGCATTGAGTCCCTTGCTAATTTCATCAAAACCCAGTTTGGAAAACTTGATATCTTGGTGAATAATGCAGGAATTCATGGAGCAGATGTTGACCGTGATGCTTTCATAGCTTTAGCTGCTGCTGGGGAAATACGTGATTGGAGAAAAATAGTAAGTCAAAATTATGAATCTGCAGAAGCAGGCATTAGAACAAACTACTTTGGTGCCAAAGGAATGTGTGAAGCATTTATTCCCCTTCTACAATTGTCAGACTCACCAAGGATAGTTAATGTTTCCTCCTCCATGGGGAAGTTGGAGAAATTACCCAATGGATGGGCTAAAGAAGTCCTGAGTGACGTTGAAAGCCTAACAGAAGAAAAGTTGGATGAGGTTTTGAATCAGTTTCTAAAAGATTTTAAAGAGGGTTTATTGGAAACCAAAGGTTGGCCTCCAGTTTCATCTGCCTATATAGTCTCTAAAGCTGCTTTGAATGCCTACACAAGGATTCTTGCCAAAAAGTACCCATCTTTCTGCATTAATGCTGTTTGCCCTGGCTATGTGAAAACAGATTTAAACTACAATACTGGCCATCTTAGTATTGATGAAGGTGCTGAGAGTGTTGTAAGGTTGGCTCTCCTACCTAATGGTGGTCCTTCTGGCCTCTTCTTTATTCGAAGTGAAGTGGCACCATTTTGA 891 0.4108 MATTATTKWHAVVTGANKGIGFGICKQLASNGITVVLTARDEKRGLEAVEKLREFGLSDHVIFHQLDVTDPNSIESLANFIKTQFGKLDILVNNAGIHGADVDRDAFIALAAAGEIRDWRKIVSQNYESAEAGIRTNYFGAKGMCEAFIPLLQLSDSPRIVNVSSSMGKLEKLPNGWAKEVLSDVESLTEEKLDEVLNQFLKDFKEGLLETKGWPPVSSAYIVSKAALNAYTRILAKKYPSFCINAVCPGYVKTDLNYNTGHLSIDEGAESVVRLALLPNGGPSGLFFIRSEVAPF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01196 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 11 294 - -
Rops8g01196 296 CDD carb_red_PTCR-like_SDR_c 11 296 IPR045313 GO:0016616
Rops8g01196 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Rops8g01196 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Rops8g01196 296 PRINTS Glucose/ribitol dehydrogenase family signature 86 97 IPR002347 -
Rops8g01196 296 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Rops8g01196 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Rops8g01196 296 FunFam (+)-neomenthol dehydrogenase 4 296 - -
Rops8g01196 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 281 IPR036291 -
Rops8g01196 296 Gene3D - 2 296 - -
Rops8g01196 296 Pfam short chain dehydrogenase 10 170 IPR002347 -
Rops8g01196 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Rops8g01196 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 IPR002347 -
Rops8g01196 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01196 Rops-Chr8 26058209 26062390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01196 12 262 Acyl Lipid Metabolism Gene Families AT1G24360 21.569 1.27e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01196 K15095 - gmx:106797124 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01196 8 26058209 26062390 Rops8g01196 8 26058209 26062390 ECH
Rops8g01196 8 26058209 26062390 Rops4g01439 4 36742343 36745440 PCT
Rops4g01437 4 36721730 36733962 Rops8g01196 8 26058209 26062390 PCT