Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01439 ATGGGAGAAGCTGCAGCAAGGTATGCAGTAGTGACTGGGGCAAACAAAGGAATTGGATTAGAGATAGTGAAGCAGTTAGCCTCAGCTGGGATCAAGGTGGTGCTTACTGCAAGAGATGAGAAGAGGGGTCTTCATGCTTTGCAAACACTCAAAGCCTCTGGTTTATCTGACCTTGTAGTTTTTCATAAGCTAGATGTGGCTGATGCTGCAAGTGTAGCTTCTCTTGCAGATTTTGTCAAATCCAAATTTGGGAAGCTTGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCCGTAATTAAGGACAATGATTTATTAACTTCAGCTATCATGAATCGTGGGGCATTATCAGAAGATGATGCGAGAAAGGCATTAACGCAAACACACGAGTTAGCTGAGGAATGCTTGCAAATAAATTATTATGGTGCTAAAATAACTACAGAATCCCTTCTGCCCCTCCTTCAGTTATCTGATTCACCAAGAATTGTGAATGTATCATCCACTATGGGGCAGTTAGAGGGTGTACCAAATGGATGGACTAAAGAAACCCTCAGTGATGCTGATAATCTTACAGAAGAGAAAGTGGATGAAGTGTTGAAGAAGTTTCTCGAAGATTTCAAAGAAGGTTCATTAGAAAGCAAAGGCTGGCCTAAGACTCTGAGTGCCTATATTATGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCTAAGAATTTCCCTAATTTCTGCATCAATAGTGTTTGTCCTGGTTATGTCAAGACAGACATAACTAACAACACTGGCTTCTTCACAGTGGAAGAAGGTGCTGCTCATCCTGTGAGGCTTGCACTGCTTCCCAATGGTAGCCCATCTGGCCTCTTCTATACCAGGAGTGAAGTGGCTTCATTTTGA 897 0.4203 MGEAAARYAVVTGANKGIGLEIVKQLASAGIKVVLTARDEKRGLHALQTLKASGLSDLVVFHKLDVADAASVASLADFVKSKFGKLDILVNNAGIGGAVIKDNDLLTSAIMNRGALSEDDARKALTQTHELAEECLQINYYGAKITTESLLPLLQLSDSPRIVNVSSTMGQLEGVPNGWTKETLSDADNLTEEKVDEVLKKFLEDFKEGSLESKGWPKTLSAYIMSKAAMNAYTRILAKNFPNFCINSVCPGYVKTDITNNTGFFTVEEGAAHPVRLALLPNGSPSGLFYTRSEVASF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01439 298 Gene3D - 3 298 - -
Rops4g01439 298 CDD carb_red_PTCR-like_SDR_c 7 295 IPR045313 GO:0016616
Rops4g01439 298 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 296 - -
Rops4g01439 298 FunFam (+)-neomenthol dehydrogenase 2 298 - -
Rops4g01439 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 284 IPR036291 -
Rops4g01439 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Rops4g01439 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 242 IPR002347 -
Rops4g01439 298 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Rops4g01439 298 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Rops4g01439 298 PRINTS Glucose/ribitol dehydrogenase family signature 285 298 IPR002347 -
Rops4g01439 298 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Rops4g01439 298 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Rops4g01439 298 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Rops4g01439 298 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Rops4g01439 298 Pfam short chain dehydrogenase 8 172 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01439 Rops-Chr4 36742343 36745440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01439 9 260 Miscellaneous Gene Families AT2G29150 28.627 4.89e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01439 K15095 - gmx:102663482 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01439 4 36742343 36745440 Rops4g01439 4 36742343 36745440 ECH
Rops8g01196 8 26058209 26062390 Rops4g01439 4 36742343 36745440 PCT