Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01437 ATGGGAGAAGAAGCTACAGAAAGGTATGCAGTTGTGACTGGGGCAAACAAAGGAATTGGGTTAGAGATAGTGAGGCAGTTAGCTTCAGCTGGAATCAAGGTGGTGCTTACAGCAAGAGATGAGAAGAGGGGTCTTGAAGCATTGCAATCACTCAAAGCCTCAGGTCTATCTGACCTTGTAGTTTTTCATCAGCTAGATGTGGCTGATGCTGCAAGCTTAGCTTCTCTGGCAGATTTTGTCAAATCCAAATTTGGGAAACTAGATATTCTGGTTAACAATGCAGGGGTTGGTGGAGTCATTATTAAGGACAATGATTTATTAACTTCAGCTATCATGAATCGTGGGGCATTGTCAGATGATGAGGCGGGAAAGGCATTCACTCAAACATACGAGTTAGCTGAAGAATGCTTGCAAATAAATTATTATGGTGCTAAAATAACTACTGAATCCCTTCTGCCCTTCCTTCAGTTATCTGATTCACCAAGAATTGTGAATGTATCATCCACACAAGGGCAGTTAGTGGGTGTACCAAATGAATGGGCTAAAGGAGTCTTCAGTGATGTTGATAACCTTACAGAAGAGAAAGTGGATGAAGTATTGAAGAAGTTCCTGGAAGATTTCAAAGAAGGTTCATTAGAAAGCAAAGGGTGGCCTAAGACTATGGGTGCCTATATTATATCTAAAGTTGCTATGAATGCCTACACAAGAATTCTTGCAAAGAATTTCCCCTCTATCTGCATCAATTGTGTTTGCCCTGGTTATGTCAAGACAGATATAACTAACCATACTGGCTTCATCACAGTTGAAGAAGGTGCTGCTCATCCTGTGAGGCTTGCACTGCTTCCCAATGGTGGTCCATCTGGCCTCTTCTATATCATGAGTGAAGTGGCTTCCTATGATTAG 903 0.4175 MGEEATERYAVVTGANKGIGLEIVRQLASAGIKVVLTARDEKRGLEALQSLKASGLSDLVVFHQLDVADAASLASLADFVKSKFGKLDILVNNAGVGGVIIKDNDLLTSAIMNRGALSDDEAGKAFTQTYELAEECLQINYYGAKITTESLLPFLQLSDSPRIVNVSSTQGQLVGVPNEWAKGVFSDVDNLTEEKVDEVLKKFLEDFKEGSLESKGWPKTMGAYIISKVAMNAYTRILAKNFPSICINCVCPGYVKTDITNHTGFITVEEGAAHPVRLALLPNGGPSGLFYIMSEVASYD* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01437 300 FunFam (+)-neomenthol dehydrogenase 3 299 - -
Rops4g01437 300 Pfam short chain dehydrogenase 9 172 IPR002347 -
Rops4g01437 300 Gene3D - 2 299 - -
Rops4g01437 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 284 IPR036291 -
Rops4g01437 300 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Rops4g01437 300 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Rops4g01437 300 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Rops4g01437 300 PRINTS Glucose/ribitol dehydrogenase family signature 155 171 IPR002347 -
Rops4g01437 300 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Rops4g01437 300 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 8 296 - -
Rops4g01437 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Rops4g01437 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 169 IPR002347 -
Rops4g01437 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01437 Rops-Chr4 36721730 36733962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01437 10 109 Miscellaneous Gene Families AT2G29150 41.584 3.35e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01437 K15095 - gmx:100801677 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01437 4 36721730 36733962 Rops4g01437 4 36721730 36733962 ECH
Rops4g01437 4 36721730 36733962 Rops8g01196 8 26058209 26062390 PCT