Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01963 ATGGCCCCTGACATCACCACCGCTGCAACCAAGGTCACCGATGCTCAAGCTAAGGCCACCGGCGGTCGTGGCCGTGCCTTCGTGACCTTCTTGGCAGGCAACGGTGACTACGTGAAGGGTGTCGTTGGCTTGGCCAAAGGTTTGAGGAAGGTCAAGACCACCTACCCTCTTGTTGTTGCAGTGTTACCTGATGTTCCTGAAGAGCACCGCAAGATTCTGACCTCACAAGGCTGCATTGTTAGAGAGATTGAACCTGTTTACCCTCCCGAGAACCAGACCCAATTTGCCATGGCGTATTATGTCATCAACTACTCCAAGCTACGTATTTGGGAGTTTGTGGAGTACAGCAAGATGATTTACCTAGATGGTGACATCCAAGTATTTGAAAACATTGATCACTTGTTTGATCTGCCTAATAATTATTTCTATGCGGTGATGGACTGTTTCTGCGAGCCCACTTGGGGCCACACCCCACAGTATCAGATCGGTTACTGCCAGCAGTGCCCTGATAAGGTTCAGTGGCCCTCTGATTTTGGGCCTAAGCCTCCTCTCTATTTCAATGCTGGGATGTTTGTTTATGAACCTAATCTGGCTACCTACCGTGACCTCCTTCAAACAGTCCAAGTCACCAAGCCCACTTCCTTTGCTGAACAGGACTTTTTGAATATGTACTTCAAGGACAAATATAAGCCTATACCTAACATTTACAATCTTGTGCTGGCCATGTTGTGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTGAAAGTGGTTCACTATTGTGCTGCTGGATCTAAGCCTTGGAGGTACACTGGGAAGGAAGAGAATATGGAGAGAGAAGATATCAAGATGCTGGTGAAGAAATGGTGGGACATATATGAGGATGAGTCTTTGGACTACAACAATCCCCTCAATGTGGATCGTTTCACTGCGGCACTTATGGAGGCTGGTGGTGTCAAGTTTGTGCCAGCCCCATCTGCTGCTTAG 987 0.4792 MAPDITTAATKVTDAQAKATGGRGRAFVTFLAGNGDYVKGVVGLAKGLRKVKTTYPLVVAVLPDVPEEHRKILTSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPNNYFYAVMDCFCEPTWGHTPQYQIGYCQQCPDKVQWPSDFGPKPPLYFNAGMFVYEPNLATYRDLLQTVQVTKPTSFAEQDFLNMYFKDKYKPIPNIYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGKEENMEREDIKMLVKKWWDIYEDESLDYNNPLNVDRFTAALMEAGGVKFVPAPSAA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01963 328 PANTHER GLYCOGENIN SUBFAMILY MEMBER 20 295 - -
Rops6g01963 328 SUPERFAMILY Nucleotide-diphospho-sugar transferases 28 298 IPR029044 -
Rops6g01963 328 Pfam Glycosyl transferase family 8 29 271 IPR002495 GO:0016757
Rops6g01963 328 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 299 IPR029044 -
Rops6g01963 328 CDD GT8_Glycogenin 25 295 - -
Rops6g01963 328 FunFam Hexosyltransferase 23 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01963 Rops-Chr6 37421071 37422777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01963 1 328 Glycosyltransferase AT1G56600 75.740 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01963 K18819 - gmx:548050 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01963 6 37421071 37422777 Rops6g01963 6 37421071 37422777 ECH
Rops8g03776 8 78356010 78358133 Rops6g01963 6 37421071 37422777 ECH
Rops8g03890 8 79854275 79856080 Rops6g01963 6 37421071 37422777 PCT