Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03890 ATGGCACCTTATATCACCACCGCTGCTGCCAATGCCACCGCTGAGCCACCAAAGTCTGGTGGTGGAAGTGGCCGTGCCTTTGTGACTTTCCTTGCTGGAAACGGTGACTACGTAAAGGGTGTTGTTGGTTTGGCTAAAGGACTGAGAAAAGTGAAGACTATTTACCCTCTTGTGGTTGCTATCTTACCTGATGTTCCTGAGGAACACCGTAAGATTCTTAAGTCTCAAGGTTGCATTGTGAGGGAGATTGAACCTGTTTACCCACCAGAGAACCAGACCCAATTTGCTATGGCCTATTATGTCATCAATTACTCCAAGCTACGTATTTGGGAGTTTGTGGAGTATAGCAAGATGATCTACCTAGATGGTGACATCCAGGTTTTTGAAAATATTGACCATCTGTTTGATCTGCCTGATAATTATTTCTATGCGGTGATGGATTGTTTCTGTGAGAAGACTTGGAGTCACACCCCTCAGTATCAGATTGGGTACTGTCAGCAGTGCCCTGATAAGGTTCAATGGCCCTCTGATTTTGGTTCCAAGCCTCCTCTGTATTTCAACGCTGGCATGTTCGTTTATGAGCCTAATCTTGCCACATACCGTGATCTCCTTCAAACAGTTCAAGTCACCAAACCCACTTGCTTTGCTGAGCAGGACTTTTTGAACATGTACTTCAAGGACAAATACAAGCCAATACCTAACGTGTACAACCTTGTGTTGGCCATGTTGTGGCGTCACCCTGAGAACGTTGAGCTTGACAAAGTTAAAGTGGTTCACTACTGTGCTGCTGGGTCTAAGCCTTGGAGGTTCACTGGGAAGGAACAGAACATGGACAGAGAAGATATCAAAATGCTTGTGAAGCAGTGGTGGGATATATATGAGGATGAGACATTGGATTATAACAACAACCCTGTAAATGTGGAACGTTTCACTGCGGCGTTGTTGGAGGCTGGTGGTGTTAAGTTTGTGCCAGCCCCATCTGCTGCTTAA 990 0.4545 MAPYITTAAANATAEPPKSGGGSGRAFVTFLAGNGDYVKGVVGLAKGLRKVKTIYPLVVAILPDVPEEHRKILKSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDNYFYAVMDCFCEKTWSHTPQYQIGYCQQCPDKVQWPSDFGSKPPLYFNAGMFVYEPNLATYRDLLQTVQVTKPTCFAEQDFLNMYFKDKYKPIPNVYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRFTGKEQNMDREDIKMLVKQWWDIYEDETLDYNNNPVNVERFTAALLEAGGVKFVPAPSAA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03890 329 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 299 IPR029044 -
Rops8g03890 329 Pfam Glycosyl transferase family 8 29 270 IPR002495 GO:0016757
Rops8g03890 329 CDD GT8_Glycogenin 25 295 - -
Rops8g03890 329 SUPERFAMILY Nucleotide-diphospho-sugar transferases 28 297 IPR029044 -
Rops8g03890 329 PANTHER GLYCOGENIN SUBFAMILY MEMBER 24 295 - -
Rops8g03890 329 FunFam Hexosyltransferase 23 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03890 Rops-Chr8 79854275 79856080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03890 1 329 Glycosyltransferase AT1G56600 74.852 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03890 K18819 - gmx:100800249 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03890 8 79854275 79856080 Rops8g03890 8 79854275 79856080 ECH
Rops8g03890 8 79854275 79856080 Rops6g01963 6 37421071 37422777 PCT