Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01367 ATGGATTCAACTCATGTAATATCCATTCCCAATGGAGAAGAGAATACTACTCCTAGGGAGAATAAGAGAACATTCCAATTTTCAATTCCCCTTCCTCCCATTATTTCACGTCTTAGAGAAAACAAAATCCTGTGCTCTCTTTTTTCTTTTACTTACAATCTCAGGGACAAGAAAAAGAAAGACACTAAAAATATGATTCACAGTATCAAAGTTGGAATCTCCCTTGTATTGGTTTCACTTCTGTACCTCTTGGATCCTCTCTATGAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTCGTCATCTTTGAATTCTCTGCAGGAGCTACGCTAGGCAAAGGTTTAAATCGAGGAATGGGAACTATATTAGGAGGTGGACTGGGTTGCATAGCAGCAGTTTTGGCTCAAAAACTTGGTGGGGTTGGCAACTCGATTATCATTGGTACTTCTGTATTTATTTTTGGCACAATTGCAACATATATTCGATTATTTCCGAGCATCAAGAAGAGATACGATTATGGAGTGATGATTTTCATCCTCACTTTTAATCTAGTAGTGGTGTCAGGGGTGCGCACTGATCAGAAAATATGGAGAATAGCACTTGAACGTCTTTCAACAATCCTCATGGGTTTCATTGTGTGTATTTGTGTGAGCTTGTTCATCTTCCCCTTGTGGGCCAGCGATGAACTTCATGGCTCTATTGGTTCAAGATTCCAAGACCTTGCTAATTCATTTCAAGGCTGCTTGGAGGAATATGTCAAATTGGCTAATGAAAAAGAAAATCAGAGTGGTGATAGCTTCTCTGTTTGCAAGTCTTTGTTGAACTCCAAGTCAAAGGATGAGTTGCTGGCAAATTTCGCAAAATGGGAACCCTGGCATGGAAAATTTGGATTTTTCTACCCTTGGGAGAAATACTTAAAGATTGGAGAGGTGCTTCGAGAGCTGGCTGCGATTATTCTTGCTATGGGAAGTTGCCTTCAAGCCTCAAAAAAGCACATGGCGTTGGCATCAGTGAGTCAAACAGACCAATTAGTATCATGTGAAGCTATTGGGTCACGGGTTGTGTGGACTCTACGAGAACTTGGAGACAGCATGAAGCAAATGAGGCAATGTAAGGCAGATCCTCACATATCATCAAAGTTAAAGGAAGCAAGAGCAGAACTAAATATGGTGATTTCCTCGTTCAAGATAGCAGCAATTGAGAATAGTGATGCACTAGCAGTTGCAAACTTCGTGTTCTTACTCAAGGAAGTGTTGGACAAAGTTGAGGAATTGAGCAAAGAGGTGGAGCAAGTTGGAGACATTGCTGGTTTTCGTGTTCATTCAACTCTAATAGTCTCTTAG 1353 0.4072 MDSTHVISIPNGEENTTPRENKRTFQFSIPLPPIISRLRENKILCSLFSFTYNLRDKKKKDTKNMIHSIKVGISLVLVSLLYLLDPLYEQVGENAMWAIMTVVVIFEFSAGATLGKGLNRGMGTILGGGLGCIAAVLAQKLGGVGNSIIIGTSVFIFGTIATYIRLFPSIKKRYDYGVMIFILTFNLVVVSGVRTDQKIWRIALERLSTILMGFIVCICVSLFIFPLWASDELHGSIGSRFQDLANSFQGCLEEYVKLANEKENQSGDSFSVCKSLLNSKSKDELLANFAKWEPWHGKFGFFYPWEKYLKIGEVLRELAAIILAMGSCLQASKKHMALASVSQTDQLVSCEAIGSRVVWTLRELGDSMKQMRQCKADPHISSKLKEARAELNMVISSFKIAAIENSDALAVANFVFLLKEVLDKVEELSKEVEQVGDIAGFRVHSTLIVS* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01367 450 Pfam Aluminium activated malate transporter 59 400 IPR020966 GO:0015743
Rops6g01367 450 MobiDBLite consensus disorder prediction 1 15 - -
Rops6g01367 450 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g01367 450 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 49 442 - -
Rops6g01367 450 Coils Coil 418 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01367 Rops-Chr6 29277580 29279788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01367 53 397 Miscellaneous Gene Families AT5G46600 42.210 1.37e-89 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01367 K25841 - gmx:100527892 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01367 6 29277580 29279788 Rops6g01367 6 29277580 29279788 ECH
Rops8g02987 8 66678503 66681047 Rops6g01367 6 29277580 29279788 PCT
Rops8g03555 8 75497541 75499545 Rops6g01367 6 29277580 29279788 PCT