Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02117 ATGGAAAGCAATATACCAGTTATAGCAAAGAGAGCATGGAGAATAATACGTGTGGTCTTCTTCATGTTGAGAAAAGGCATATCAAAGGGAAAGCTAATGATGGACCTCAACATGATGCTCAAACGCCGTGGCAAGCTCGCCGGAAAAGCCATCACCAACCTCATGTTCCACCACGGAGGCTCCACCTCTAACCGCCGTTCCCACGATGACTCACGCCTACAATTCTCCGCCACAAGGGAATACGAGTTCAGCTGCAGCAACACACCCAACAACTTCTTCGCCCTAGGCGGCAACAACCATAATAAGCGTCACCGCCACAACCATTTCTTCACTTGTGCTCACGCGCCGCCCACACATGACGACGATGTTGTGACCGTTAATGCAGTTAAGGCGGTGTTGGAAATGCTTAACAATGAGGTCATCGTGGAGGCTTCGCCGGCGCTACCCGGGTTCGGGCAAAGCCCTATGGTGAGGCAGTTGAGGGTTACGGACTCTCCTTTCCCACTTAGAGATACTGAAGAGAAGGACAACCAGGTTGACAAGGCTGCTGAAGAGTTCATAAAGAGGTTCTACAAGGATTTGAGGAACCAAGCTTGA 597 0.5042 MESNIPVIAKRAWRIIRVVFFMLRKGISKGKLMMDLNMMLKRRGKLAGKAITNLMFHHGGSTSNRRSHDDSRLQFSATREYEFSCSNTPNNFFALGGNNHNKRHRHNHFFTCAHAPPTHDDDVVTVNAVKAVLEMLNNEVIVEASPALPGFGQSPMVRQLRVTDSPFPLRDTEEKDNQVDKAAEEFIKRFYKDLRNQA* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02117 198 Pfam Cotton fibre expressed protein 176 197 IPR008480 -
Rops4g02117 198 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 4 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02117 Rops-Chr4 47633604 47634512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02117 - - gmx:100802625 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02117 4 47633604 47634512 Rops7g00265 7 3433069 3433671 ECH
Rops2g00325 2 4869141 4870273 Rops4g02117 4 47633604 47634512 ECH
Rops5g00112 5 1897459 1898448 Rops4g02117 4 47633604 47634512 ECH
Rops4g02117 4 47633604 47634512 Rops4g02117 4 47633604 47634512 ECH
Rops7g00265 7 3433069 3433671 Rops4g02117 4 47633604 47634512 PCT