Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2608 ATTTCTGATATCTCACATCACTGCATTTCCAATTTCTCCTTAGCTTTAAGTTTCTATCCATATCTTGTAGTTCAATTTAAACTTCTAAGCAGCATGGGGGCACTCACTTTCACAGAGGAGTTTACTAGCAGTGTCCAGCCAGGAAGGTTGTTCAAGGCTTTGATCCTTGATGCTCCAAACCTCATCCCCAAGCTGATGCCTGATGCCATTAAGAATGTTCAATTGGTTGAAGGGAACGGAGGCCCTGGAAGCATTCAGGAGATAACCATTGCTGAAGGTGATAAGATCAAACACTTGAAGCATAGAATTGATGCAATAGACCCAGAGAAATTGACTTACAGCTACGCAGTGATTGAGGGGGATGGTGCACTGGAAAAAGTGGATTCAATTTCACATGAGATTAAGTTCGAGGCCACTGAGGAGGGAGGTTGCAAGACCAAGAATGTGAGCACTTATCATCCCAAAGCAGGGGTTGATGTCAAAGAGGAGGATTTCAAGGCTGCAAAGGAAGAAGGTTTGGCTCTCCTCAAGGTAGTGGATGCGTATCTTGTGGCAAACCCAGAGGCCTATGCTTGA 576 0.4462 ISDISHHCISNFSLALSFYPYLVVQFKLLSSMGALTFTEEFTSSVQPGRLFKALILDAPNLIPKLMPDAIKNVQLVEGNGGPGSIQEITIAEGDKIKHLKHRIDAIDPEKLTYSYAVIEGDGALEKVDSISHEIKFEATEEGGCKTKNVSTYHPKAGVDVKEEDFKAAKEEGLALLKVVDAYLVANPEAYA* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2608 191 PANTHER - 32 191 - -
Pvu9g2608 191 SMART Bet_v_1_2 30 186 IPR000916 GO:0006952
Pvu9g2608 191 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 32 191 - -
Pvu9g2608 191 Pfam Pathogenesis-related protein Bet v 1 family 32 185 IPR000916 GO:0006952
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 34 54 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 57 67 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 81 90 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 97 116 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 116 129 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 141 157 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 PRINTS Major pollen allergen Bet V1 signature 175 185 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu9g2608 191 SUPERFAMILY Bet v1-like 35 190 - -
Pvu9g2608 191 CDD Bet_v1-like 36 183 - -
Pvu9g2608 191 Gene3D - 33 189 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2608 Pvu-Chr9 36547187 36548248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2608 - - pvu:PHAVU_009G252400g 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2608 9 36547187 36548248 Pvu9g2608 9 36547187 36548248 ECH
Pvu3g1131 3 26991324 26992353 Pvu9g2608 9 36547187 36548248 PCT
Pvu9g2608 9 36547187 36548248 Pvu3g1132 3 27013976 27014992 PCT