Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1132 ATGGGTGTTTTCACATTCGAGGATCAAACCACTTCTCCTGTAGCTCCTGCTACCCTCTACAAAGCTGTTGCTAAAGACGCCGATACCATCTTCCCAAAGGCTCTTCCTGATTCCTTCAAGAGTGTTGAAATCGTTGAGGGCAACGGTGGCCCTGGAACCATCAAGAAGATCTCTTTCGTTGAGGATGGAGAGACAAAATTTGTGTTGCACAAAATAGAATCAATAGATGAGGCCAATTTGGGATACAGCTACAGCATAGTTGGAGGTGTTGCCTTGCCAGAAACTGCAGAGAAGATCACTTTCGACTCCAAACTCAGTGATGGTCCTAACGGAGGATCACTCATTAAGCTGAGTATAACATACCACAGCAAAGGAGATGCTCCACCCAATGAAGATGAACTCAAAGCTGGAAAAGCCAAGAGTGATTCTCTTTTCAAGGCCGTAGAGGCATACCTTCTGGCCAATCCCTGA 471 0.4586 MGVFTFEDQTTSPVAPATLYKAVAKDADTIFPKALPDSFKSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIESIDEANLGYSYSIVGGVALPETAEKITFDSKLSDGPNGGSLIKLSITYHSKGDAPPNEDELKAGKAKSDSLFKAVEAYLLANP* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 SUPERFAMILY Bet v1-like 2 156 - -
Pvu3g1132 156 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Pvu3g1132 156 Gene3D - 1 156 IPR023393 -
Pvu3g1132 156 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Pvu3g1132 156 PANTHER ABA-RESPONSIVE PROTEIN 1 156 - -
Pvu3g1132 156 CDD Bet_v1-like 4 152 - -
Pvu3g1132 156 PANTHER - 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1132 Pvu-Chr3 27013976 27014992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1132 - - vun:114177054 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1132 3 27013976 27014992 Pvu3g1132 3 27013976 27014992 ECH
Pvu3g1132 3 27013976 27014992 Pvu9g2613 9 36572686 36574486 PCT
Pvu9g2608 9 36547187 36548248 Pvu3g1132 3 27013976 27014992 PCT