Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2047 ATGAGCTGGTCTGGTGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGGGATTCATGCCAAAGTTGTGGATACCCCAAATTTGGAGGCCCTGACCCAACAGCTTACAGATACAACTTGACTGAAGCCTTGGCAGGGGACTGGTATTGCACTTCTATGAACTGTGGAGCTCACAACTATGCCAGCAGATCAAGCTGCTACAGATGTGGTGCATTGAAAGATGGTTATTCTTGTGGACTTGGAGAAAACATGGATGCCTGTGGAGGATATGCTTCTGATTGCAATCATCCCCTTGGCTGGAAAACTGGTGACTGGATTTGCACTAGAATTGGCTGTGGAGTTCATAACTATGCTAGCAGAACAGAATGTTTCAAGTGCAAAACACCCAGAAATTTTGGTGATGCAGACTGA 423 0.4563 MSWSGGDWMCGACQHINFKKRDSCQSCGYPKFGGPDPTAYRYNLTEALAGDWYCTSMNCGAHNYASRSSCYRCGALKDGYSCGLGENMDACGGYASDCNHPLGWKTGDWICTRIGCGVHNYASRTECFKCKTPRNFGDAD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2047 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Pvu9g2047 140 SMART zf_4 6 30 IPR001876 -
Pvu9g2047 140 SMART zf_4 50 76 IPR001876 -
Pvu9g2047 140 SMART zf_4 107 133 IPR001876 -
Pvu9g2047 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Pvu9g2047 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Pvu9g2047 140 PANTHER ZINC FINGER PROTEIN 1 137 - -
Pvu9g2047 140 SUPERFAMILY Ran binding protein zinc finger-like 100 136 IPR036443 -
Pvu9g2047 140 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Pvu9g2047 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Pvu9g2047 140 Gene3D - 1 35 - -
Pvu9g2047 140 Gene3D - 97 136 - -
Pvu9g2047 140 Gene3D - 45 79 - -
Pvu9g2047 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Pvu9g2047 140 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Pvu9g2047 140 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Pvu9g2047 140 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 137 - -
Pvu9g2047 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Pvu9g2047 140 SUPERFAMILY Ran binding protein zinc finger-like 49 79 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2047 Pvu-Chr9 29325261 29327088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2047 - - gmx:100792208 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1683 3 37050576 37052106 Pvu9g2047 9 29325261 29327088 PCT
Pvu9g2047 9 29325261 29327088 Pvu3g1684 3 37059192 37061512 PCT