Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1683 TCATCATCTTGGCTCCTGCTATTCCAAAACTGCTACTATACTAACTCACAAGTCATTACTTGCTTAATACTTCTATTGCTCATCATTCTTCTTGAAAGGAAAATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCGAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGACCTGACCCTTCAACCTACAGATACAACAAGACTGAAGCTTTGGCAGGGGACTGGTTCTGCAACTGTGGAGGTCACAACTATGGCAGTAGATCAAGGTGCTATAGATGTGGTGCAGTTAAAGATTATTACTCTTCAGTATATGGCAGCAACTCTGGAGAATATGGATCTAACACTTTCCCTCCAGGATGGAAGACTGGAGACTGGTTTTGCCCAAGAATCGGCTGTGGAGGGCATAATTATGCTAGCAGGACAGAATGCTTTAAATGCAAAATGCCTAGGGATTTTGACTAG 495 0.4384 SSSWLLLFQNCYYTNSQVITCLILLLLIILLERKMSWSGGDWMCGVCEHINFKKREACQSCGYPKYGGPDPSTYRYNKTEALAGDWFCNCGGHNYGSRSRCYRCGAVKDYYSSVYGSNSGEYGSNTFPPGWKTGDWFCPRIGCGGHNYASRTECFKCKMPRDFD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1683 164 SUPERFAMILY Ran binding protein zinc finger-like 81 110 IPR036443 -
Pvu3g1683 164 ProSiteProfiles Zinc finger RanBP2 type profile. 38 67 IPR001876 -
Pvu3g1683 164 PANTHER ZINC FINGER PROTEIN 23 163 - -
Pvu3g1683 164 Gene3D - 31 69 - -
Pvu3g1683 164 Gene3D - 125 162 - -
Pvu3g1683 164 Gene3D - 75 109 - -
Pvu3g1683 164 ProSiteProfiles Zinc finger RanBP2 type profile. 132 163 IPR001876 -
Pvu3g1683 164 SUPERFAMILY Ran binding protein zinc finger-like 125 162 IPR036443 -
Pvu3g1683 164 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 23 163 - -
Pvu3g1683 164 ProSitePatterns Zinc finger RanBP2-type signature. 42 61 IPR001876 -
Pvu3g1683 164 Pfam Zn-finger in Ran binding protein and others 83 108 IPR001876 -
Pvu3g1683 164 Pfam Zn-finger in Ran binding protein and others 132 160 IPR001876 -
Pvu3g1683 164 Pfam Zn-finger in Ran binding protein and others 40 66 IPR001876 -
Pvu3g1683 164 SMART zf_4 84 107 IPR001876 -
Pvu3g1683 164 SMART zf_4 134 160 IPR001876 -
Pvu3g1683 164 SMART zf_4 40 64 IPR001876 -
Pvu3g1683 164 ProSitePatterns Zinc finger RanBP2-type signature. 136 157 IPR001876 -
Pvu3g1683 164 SUPERFAMILY Ran binding protein zinc finger-like 34 68 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1683 Pvu-Chr3 37050576 37052106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1683 - - pvu:PHAVU_003G162400g 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1683 3 37050576 37052106 Pvu9g2047 9 29325261 29327088 PCT