Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2174 ATGAGGCCTTCTCATATTTTATCACTAGCATTGTCCTTATACTTTCTTACTTTGTTTCTTCCCACCCAAGCTAGGTACCATTTCCATAAAAACAAACACTCACATTATCATAATGCACCTGAAATTTCACCATCTCCTTCTCCATTGCCTGGACCTTCTAGCGCCCCTGATGAAGCTCCTTCTCCTAGCCCCACTGTTGATGAGAACTACCACAACACATCTAATAACTTGTTTGATATTCGAGCATTTGGGGCCATCGGAGATGGAGTAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCGGTTAAAGTTATCCTCGTTCCCCACGGTCTCTCCTTCATTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCCGATGGACCTGACTCTTGGCCAAAGAACAACAGTAGGCGTCAATGGCTTGTCTTCTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGATTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCATTAAGATTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAAAATCAAGAACAGCCCCCAATTCCACTTCAGATTTGATGGCTGCGAAAGCGTCCACGTGGAATCAATCTACATAACATCTCCAGCACTCAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTCAAAATATACAATTCGGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATAACATGTGGACCTGGACATGGTATAAGTATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATAACGGTGAGGGACTCGGTTATAAAAGTATCAGATAACGGGGTTAGAATCAAGACATGGCAAGGTGGCTCAGGATCAGTATCAGGAGTGACATTTACTAATATTCATATGGAAAGTGTAAGAAACCCCATTATAATTGATCAGTTTTACTGCCTCAGTAAGGATTGCTCCAACAAGACCTCTGCAGTCTTTGTATCGAATATATCTTACACAAACATAAAGGGAACATATGATATAAGGCACCCTCCAATGCATTTTGCTTGCAGTGATTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAACTTCTTCCATCTGAAGGAGACATAGTGCATGATCCTTACTGCTGGAGTGCCTATGGAATCTCTCAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTCCCTCAGTCCATTTCAGGAAATGACATAGATCATTGCTGA 1425 0.4323 MRPSHILSLALSLYFLTLFLPTQARYHFHKNKHSHYHNAPEISPSPSPLPGPSSAPDEAPSPSPTVDENYHNTSNNLFDIRAFGAIGDGVTDDTESFKMAWDTACQSESAVKVILVPHGLSFIIQSTIFTGPCKGGLVLKVDGTLMPPDGPDSWPKNNSRRQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTSPGPCDSPVALRFFMSSNLTVQGLKIKNSPQFHFRFDGCESVHVESIYITSPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFTNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPSEGDIVHDPYCWSAYGISQTLTIPPVSCLLEGLPQSISGNDIDHC* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2174 474 Gene3D - 63 459 IPR012334 -
Pvu7g2174 474 SUPERFAMILY Pectin lyase-like 75 462 IPR011050 -
Pvu7g2174 474 SMART pbh1 268 289 IPR006626 -
Pvu7g2174 474 SMART pbh1 350 371 IPR006626 -
Pvu7g2174 474 SMART pbh1 241 267 IPR006626 -
Pvu7g2174 474 SMART pbh1 291 311 IPR006626 -
Pvu7g2174 474 SMART pbh1 321 342 IPR006626 -
Pvu7g2174 474 MobiDBLite consensus disorder prediction 43 59 - -
Pvu7g2174 474 ProSitePatterns Polygalacturonase active site. 298 311 IPR000743 GO:0004650|GO:0005975
Pvu7g2174 474 PANTHER - 7 464 - -
Pvu7g2174 474 MobiDBLite consensus disorder prediction 37 70 - -
Pvu7g2174 474 Pfam Glycosyl hydrolases family 28 109 427 IPR000743 GO:0004650|GO:0005975
Pvu7g2174 474 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2174 Pvu-Chr7 44977220 44979547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu7g2174 74 474 Glycoside Hydrolase AT1G02460 71.782 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2174 - - gmx:100792285 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2174 7 44977220 44979547 Pvu7g2174 7 44977220 44979547 ECH
Pvu1g2233 1 47926927 47929775 Pvu7g2174 7 44977220 44979547 ECH
Pvu6g1269 6 23701717 23706599 Pvu7g2174 7 44977220 44979547 ECH
Pvu1g2233 1 47926927 47929775 Pvu7g2174 7 44977220 44979547 PCT