Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2233 ATGAAGCATTCTCCTATTTTACCACTAGCATTGTCTATATTTTTCCTTACTTTATGTCTTCTGGTCCAAGCTAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAGTCTTCTAAACATTCAAATCCTGCACCTCCTAGCCCTCCTCATAATGAGAACAATAACAATGCTTCTGGCGTTTTGGATGTACGAACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCTTGCCAAAGTGAATCAGCAGTTAATGCTATTCTTGTACCTCAAGGTTTCTCTTTCCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAAGTCTCATGGTGTTGAAGGTTGATGGCACTCTTATGCCACCTGATGGACCCGAATCTTGGCCAAAGAACAACAGTAGGCACCAATGGTTGGTGTTTTATAGAATCAATGGAATGTCAATGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCTAATGGGACAACACTCCCTGGACCCTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGCTCCAACTTAACTGTGCAAGGACTAAGGGTAAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCACATTGAATCAATCTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGACGTGAAGATATACAATTCTGTTATTTCTAATGGTGATGATTGTGTTTCCATTGGATCCGGCTGCAATGATGTCGATATTAAGAACATTACATGTGGCCCTGGTCATGGAATTAGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCGCTTATAAAAGTGACAGAAAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTGTCTGGAGTGACATTCAACAATATTCATATGGTTAGTGTAAGAAATCCCATCATAATCGACCAATTCTACTGCCTCACTAAGGATTGCACCAACAAGACCTCTGCAGTATCTGTATCAAATATTGTTTACACAAACATAAAGGGGACTTATGATATAAGGAGCCCGCCTATGCGTTTTTCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCTCAAGGAGACATAGTGCATGACCCTTTCTGTTGGAATGCATATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTCGAGGGCACTCCTCAATCCGTGTTAGACTTTGACATAACTCGTTGCTGA 1383 0.4194 MKHSPILPLALSIFFLTLCLLVQARHHSHTKHKHSHSHKSSKHSNPAPPSPPHNENNNNASGVLDVRTFGAIGDGKTDDTESFKMAWDTACQSESAVNAILVPQGFSFLIQSTIFTGPCQSLMVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSMEGSGLIDGRGEKWWDLPCKPHKGPNGTTLPGPCDSPIAIRFFMSSNLTVQGLRVKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSLIKVTENGVRIKTWQGGSGSVSGVTFNNIHMVSVRNPIIIDQFYCLTKDCTNKTSAVSVSNIVYTNIKGTYDIRSPPMRFSCSDSVPCTNLTLSEIELLPAQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDFDITRC* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2233 460 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Pvu1g2233 460 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 450 - -
Pvu1g2233 460 SUPERFAMILY Pectin lyase-like 62 450 IPR011050 -
Pvu1g2233 460 MobiDBLite consensus disorder prediction 29 61 - -
Pvu1g2233 460 Pfam Glycosyl hydrolases family 28 94 413 IPR000743 GO:0004650|GO:0005975
Pvu1g2233 460 SMART pbh1 277 297 IPR006626 -
Pvu1g2233 460 SMART pbh1 307 328 IPR006626 -
Pvu1g2233 460 SMART pbh1 227 253 IPR006626 -
Pvu1g2233 460 SMART pbh1 254 275 IPR006626 -
Pvu1g2233 460 SMART pbh1 336 357 IPR006626 -
Pvu1g2233 460 Gene3D - 49 446 IPR012334 -
Pvu1g2233 460 PANTHER - 7 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2233 Pvu-Chr1 47926927 47929775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2233 58 460 Glycoside Hydrolase AT1G02460 70.936 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2233 - - gmx:100778836 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2233 1 47926927 47929775 Pvu1g2233 1 47926927 47929775 ECH
Pvu1g2233 1 47926927 47929775 Pvu7g2174 7 44977220 44979547 ECH
Pvu6g1269 6 23701717 23706599 Pvu1g2233 1 47926927 47929775 ECH
Pvu1g2233 1 47926927 47929775 Pvu7g2174 7 44977220 44979547 PCT