Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1269 ATGAGTCTCATTCGCTGGTCTTTTATCCTATGGATTACCATGATTCTTTTTATCCATAATTGGGATAATGTGGAAGGAAGATACCACTATCACAAGGGGCAGAAGAAAAGTCCCCCTGCTGAGTCCCCTACACCTGAGGAACCTTCTTCACCTCCTTCCATTTCCCCTGGTGTTCCCTCTGATCCTTATCCCACTGATCCTGGGGATTCCCCTTCAAACTGCATTTTCGATGTAAGATCCTTTGGGGCAGTTGGAGATGGTTCAGCTGATGACACAGAAGCATTCGTGGCAGCATGGAAAGCAGCTTGTGCTGTCGAGTCAGGGGTTGTTCTTGTTCCAGAAAATTACTGCTTCAAAATAACTTCAACTATCTTTACAGGTCCATGCAAGCCTGGACTAGTATTTCAAGTGGATGGTACTCTCATGGCACCTGATGGACCAGAATCTTGGCCCAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAACAGTGGTGGGATCTTCCTTGCAAACCTCACCGGGGTCCCGATGAAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGTTCCAATTTGGTGCTGAGTGGGGTGAAAATTCAAAACAGTCCTATGTTTCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATAGACAAGTTGTCAATTTCTTCTCCTAAACTCAGTCCAAATACTGACGGCATCCACTTAGGAAATACAAAGGGTGTAGGGATATATAACTCCGTAATAAGCAATGGTGACGATTGCATCTCAATTGGACCCGGGTGCTCAGACGTGGATATAGAGGGCGTCACTTGTGCTCCTACCCATGGTATTAGCATTGGAAGCCTCGGAGTGCACAATTCCCAGGCATGTGTCTCAAACTTAACTGTTCGCAACACCATCATAAAGGAATCAGACAATGGCCTGAGGATCAAGACATGGCAAGGTGGAACGGGCTCAGTGAGTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGGAACTGCATCATCATTGACCAGTACTACTGCTTGTCCAAGGAGTGTCTGAACCAAACTTCAGCAGTGCATGTAAACAATGTGATATATAGGAACATAAAGGGTACTTATGATGTGAGAACTCCTCCTATACACTTTGCTTGCAGTGACACTGTGGCATGCACCAACATAACACTCTCTGAGATTGAGCTTTTGCCATACGAAGGGCAATTACTCGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTAAGAGAAGGTGAACCTGATACAGTTGTGGAGCTCTCTGCCTATGAATGTAGGAATTAA 1419 0.4496 MSLIRWSFILWITMILFIHNWDNVEGRYHYHKGQKKSPPAESPTPEEPSSPPSISPGVPSDPYPTDPGDSPSNCIFDVRSFGAVGDGSADDTEAFVAAWKAACAVESGVVLVPENYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDEKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSVISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNNVIYRNIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGQLLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVELSAYECRN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1269 472 PANTHER - 4 461 - -
Pvu6g1269 472 MobiDBLite consensus disorder prediction 41 66 - -
Pvu6g1269 472 SMART pbh1 317 338 IPR006626 -
Pvu6g1269 472 SMART pbh1 237 263 IPR006626 -
Pvu6g1269 472 SMART pbh1 287 307 IPR006626 -
Pvu6g1269 472 SMART pbh1 264 285 IPR006626 -
Pvu6g1269 472 SMART pbh1 346 367 IPR006626 -
Pvu6g1269 472 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 4 461 - -
Pvu6g1269 472 Pfam Glycosyl hydrolases family 28 110 423 IPR000743 GO:0004650|GO:0005975
Pvu6g1269 472 SUPERFAMILY Pectin lyase-like 73 469 IPR011050 -
Pvu6g1269 472 MobiDBLite consensus disorder prediction 30 66 - -
Pvu6g1269 472 Gene3D - 66 460 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1269 Pvu-Chr6 23701717 23706599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1269 9 469 Glycoside Hydrolase AT1G48100 72.198 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1269 - - gmx:100785528 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1269 6 23701717 23706599 Pvu6g1269 6 23701717 23706599 ECH
Pvu6g1269 6 23701717 23706599 Pvu1g2233 1 47926927 47929775 ECH
Pvu6g1269 6 23701717 23706599 Pvu7g2174 7 44977220 44979547 ECH