Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1868 ATGGGGGCGTATAGAGCTGATGAGGATTATGATTACCTGTTCAAGGTTGTGCTGATTGGGGACTCTGGAGTGGGAAAATCCAACCTTTTGTCGAGGTTCACCAAAAATGAATTCTGCCTTGAATCAAAGTCCACTATTGGGGTTGAGTTTGCAACCAGAAGCATTAGGGTGGATGATAAGATTGTCAAAGCTCAGATTTGGGACACTGCTGGTCAGGAAAGGTACCGAGCGATCACTAGTGCATATTATCGAGGAGCTGTTGGTGCTTTGTTAGTGTATGATGTTACCCGGCATGTTACATTTGAGAATGTGGAGAGATGGTTCAAGGAGCTCAGAGATCACACGGATGCCAACATTGTGGTGATGGTTGTTGGGAACAAAGCAGACTTGCGTCATCTGCGAGCAGTTTCCACCGAAGATGCTACAACTTTTGCAGAACGGAAAAAAACATTTTTCATGGAAACCTCTGCCCTCGAGTCCATGAACGTTGAAAATGCCTTCACAGAACTGCTCACACAGATCTACCATGTTGTAAGCACGAAGGCCCTTGAAATTGGCGATGATCCAGCAGCATTACCAAAAGGACAGACGTTAAATGTTGGGTCTCGTGATGGTGTATCAGATGTGAAGCAGAATGGATGCTGTTCTGCTTGA 654 0.4541 MGAYRADEDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFCLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWFKELRDHTDANIVVMVVGNKADLRHLRAVSTEDATTFAERKKTFFMETSALESMNVENAFTELLTQIYHVVSTKALEIGDDPAALPKGQTLNVGSRDGVSDVKQNGCCSA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1868 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Pvu6g1868 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Pvu6g1868 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Pvu6g1868 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Pvu6g1868 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Pvu6g1868 217 ProSiteProfiles small GTPase Ras family profile. 8 217 IPR001806 GO:0003924|GO:0005525
Pvu6g1868 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Pvu6g1868 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 180 IPR027417 -
Pvu6g1868 217 SMART ras_sub_4 11 177 - -
Pvu6g1868 217 SMART rab_sub_5 14 177 - -
Pvu6g1868 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Pvu6g1868 217 SMART ran_sub_2 19 214 - -
Pvu6g1868 217 Gene3D - 6 215 IPR027417 -
Pvu6g1868 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Pvu6g1868 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 169 IPR005225 GO:0005525
Pvu6g1868 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Pvu6g1868 217 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Pvu6g1868 217 CDD Rab11_like 11 175 - -
Pvu6g1868 217 PANTHER DRAB11-RELATED 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1868 Pvu-Chr6 28979036 28981289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g1868 15 176 EF-hand Containing Proteins AT5G27540 26.437 1.45e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1868 K07904 - gmx:100783534 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1868 6 28979036 28981289 Pvu6g1868 6 28979036 28981289 ECH
Pvu5g1032 5 29964993 29967074 Pvu6g1868 6 28979036 28981289 ECH
Pvu6g1868 6 28979036 28981289 Pvu11g1357 11 29571753 29572871 ECH