Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1032 ATGGGTGCCGACGAAGACTATGACTACTTGTTCAAGCTCGTACTCATCGGTGATTCTGCCGTTGGAAAGTCTAATCTCTTGTCACGATTCACGCGAAACGAGTTCAGCTTAGAGACCAAATCCACCATCGGCGTCGAATTCGCCACCCGCAGCGTCCCCGTCGATAGCAAGCTTGTCAAGGCACAAATCTGGGACACCGCCGGTCAAGAAAGATATCGTGCTATTACAAGTGCATATTACCGAGGAGCAGTTGGTGCTTTGGTTGTGTACGATGTAACTCGACAATTGACGTTTGAGAACGTGGAGAGATGGTTGAAGGAGCTTCGGGATCACACAGAAGCATATGCTGTAGTCATGCTAGTGGGAAACAAGGCAGATCTTCGACATTTGCGTGCTGTGTCAACTGAAGAAGCCAAAGAATTTGCAGAGAAAGAGAATATATACTTCATGGAAACCTCTGCCCTTGAGTCCTTGAATGTGGACAAAGCTTTCATAGAAGTGCTGACTCAGATATACAATGTTGTGAGTAGGAAAACTCTTGAGACAGTGGATAACCCTCCTGCAACATCCTTGCCCAAAGGGGAAACCATTGTTGTTGGAACCAAAGATGATGTCTCAGCAGTTAAAAAGAGTGGATGCTGTTCCACATAG 651 0.4639 MGADEDYDYLFKLVLIGDSAVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPVDSKLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRQLTFENVERWLKELRDHTEAYAVVMLVGNKADLRHLRAVSTEEAKEFAEKENIYFMETSALESLNVDKAFIEVLTQIYNVVSRKTLETVDNPPATSLPKGETIVVGTKDDVSAVKKSGCCST* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1032 216 PRINTS Transforming protein P21 ras signature 11 32 - -
Pvu5g1032 216 PRINTS Transforming protein P21 ras signature 34 50 - -
Pvu5g1032 216 PRINTS Transforming protein P21 ras signature 52 74 - -
Pvu5g1032 216 PRINTS Transforming protein P21 ras signature 114 127 - -
Pvu5g1032 216 PRINTS Transforming protein P21 ras signature 149 171 - -
Pvu5g1032 216 ProSiteProfiles small GTPase Rab1 family profile. 6 214 - -
Pvu5g1032 216 CDD Rab11_like 8 172 - -
Pvu5g1032 216 ProSiteProfiles small GTPase Ras family profile. 5 216 IPR001806 GO:0003924|GO:0005525
Pvu5g1032 216 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Pvu5g1032 216 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 216 - -
Pvu5g1032 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 180 IPR027417 -
Pvu5g1032 216 Pfam Ras family 12 172 IPR001806 GO:0003924|GO:0005525
Pvu5g1032 216 ProSiteProfiles small GTPase Rho family profile. 4 172 - -
Pvu5g1032 216 SMART rho_sub_3 13 174 IPR001806 GO:0003924|GO:0005525
Pvu5g1032 216 Gene3D - 3 214 IPR027417 -
Pvu5g1032 216 PANTHER DRAB11-RELATED 1 216 - -
Pvu5g1032 216 SMART ras_sub_4 8 174 - -
Pvu5g1032 216 SMART rab_sub_5 11 174 - -
Pvu5g1032 216 SMART ran_sub_2 16 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1032 Pvu-Chr5 29964993 29967074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1032 K07904 - gmx:100305599 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1032 5 29964993 29967074 Pvu6g1868 6 28979036 28981289 ECH
Pvu5g1032 5 29964993 29967074 Pvu5g1032 5 29964993 29967074 ECH
Pvu5g1032 5 29964993 29967074 Pvu11g1357 11 29571753 29572871 ECH