Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g1539 ATGATGCTGGCCCCACCACACTGCCACCCTAACCCAGATGCTCACTTTCTCTTCTTCCCCCCTTTAAATTCTCCTTCTCCTCTCTCTTCAATTCATTCCCCTTCATTCTTTCTCTGCTTTCATTTGCTTTGTTCAGTTATCATGGGAAACATGTCAAATGTGGTCGTCTTCTGTTTCTGTCTCTGGACCCTCTTGTTTTGTCTGGCGTCATCTGCACCCAACGATGGCTTGCGCAGGATTGGACTGAAAAAGATCAAATTGGACAGCGATGACGTTATGCGGTTTAAAGAATTGCGGTCTTTAGCCAGAAAGCATGATCTTCAGAACATTCTTCGCGGAGCTGCGGAACCCGATATTGTTGGGTTGAAGAACTACTTGGATGCTCAGTATTATGGTGAAATTGCAATTGGTACCCCTCCCCAGACGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCTTCTAAATGTTACCTCTCGCTTGCATGTTACACGCACGCTAAGTACAAGTCTAGCCAATCCAGTACCTACTCGGCAAATGGGACTTCTGCTGCAATTGAATATGGTAGTGGAAGCATTTCTGGTTTCTTTAGCAATGACAATGTCAGAGTTGGAGACGTAGTTATAAGCAACCAGGCATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCAGCTAAGTTTGATGGCATACTTGGACTAGGATTTCAAGAGATATCAGTAGGAAATGCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGTCTTGTAAAGGATCCAGTATTTTCATTTTGGTTAAATCGTAAACCAGAAGAAGAGAATGGGGGTGAGATTGTTTTTGGTGGTGCTGATTCTGCTCACTACAGGGGAAAACATACTTATGTGCCAGTGACAAGAAAAGGATATTGGCAGTTTGACATGGGAGAGGTGCTTATTGCTGGTAAACCCACTGGATTCTGTGCTAGTGGCTGTTCTGCAATTGCGGACTCTGGAACTTCTTTGTTGGCTGGTCCAACGACTATAGTTACTGAGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGCAAAGAGTGCAAGTCTGTTGTCGAACAGTATGGACAAACGATCATGGAATTGCTCTTAGCTGAAGCAAAGCCTAACAAGATCTGCTCACAAATTGGATTGTGTTCCTTTGATGGGACTCGTGGTGTTAGCACGGGCATTGAGAGTGTGGTGGATAAGAACAATAGAAACTCATCTGGTGCCATTCGGGATGCTGTTTGTTCAACATGTGAGATGGCTGTTATTTGGATGCAAAACCAGCTGAGGCAGAACCAGACAGAAGATCGTATAATAGACTATGTCAATGGGCTTTGTGATAAGTTGCCCAGCCCAATGGGACAATCATCCGTTGATTGTGGAAAACTCTCTTCAATGCCTATTGTTTCCTTCACTGTTGGTGGAAAGGTTTTTGACCTTTCCCCAAAGGAGTATATACTGAAGGTGGGAGAAGGTCCTCAAGCCCAATGCATCAGTGGCTTCATTGCTCTGGATGTGCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGATGTCTTCATGGGGCGCTATCACACCATCTTTGATTATGGTCAGCAGAGAGTCGGATTTGCTGTAGCAGCATAG 1665 0.4474 MMLAPPHCHPNPDAHFLFFPPLNSPSPLSSIHSPSFFLCFHLLCSVIMGNMSNVVVFCFCLWTLLFCLASSAPNDGLRRIGLKKIKLDSDDVMRFKELRSLARKHDLQNILRGAAEPDIVGLKNYLDAQYYGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYLSLACYTHAKYKSSQSSTYSANGTSAAIEYGSGSISGFFSNDNVRVGDVVISNQAFIEATREPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMVEQGLVKDPVFSFWLNRKPEEENGGEIVFGGADSAHYRGKHTYVPVTRKGYWQFDMGEVLIAGKPTGFCASGCSAIADSGTSLLAGPTTIVTEINQAIGASGVVSKECKSVVEQYGQTIMELLLAEAKPNKICSQIGLCSFDGTRGVSTGIESVVDKNNRNSSGAIRDAVCSTCEMAVIWMQNQLRQNQTEDRIIDYVNGLCDKLPSPMGQSSVDCGKLSSMPIVSFTVGGKVFDLSPKEYILKVGEGPQAQCISGFIALDVPPPRGPLWILGDVFMGRYHTIFDYGQQRVGFAVAA* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g1539 554 Pfam Eukaryotic aspartyl protease 129 552 IPR033121 -
Pvu6g1539 554 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 53 554 - -
Pvu6g1539 554 ProSiteProfiles Peptidase family A1 domain profile. 130 551 IPR033121 -
Pvu6g1539 554 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 145 156 IPR001969 GO:0004190|GO:0006508
Pvu6g1539 554 ProSiteProfiles Saposin B type domain profile. 424 465 IPR008139 -
Pvu6g1539 554 Pfam Saposin-like type B, region 1 427 463 IPR007856 GO:0006629
Pvu6g1539 554 SMART sapb_4 324 396 IPR008139 -
Pvu6g1539 554 SUPERFAMILY Saposin 361 463 IPR011001 -
Pvu6g1539 554 CDD phytepsin 120 551 IPR033869 GO:0004190
Pvu6g1539 554 Gene3D Acid Proteases 290 554 IPR021109 -
Pvu6g1539 554 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 53 554 IPR001461 GO:0004190|GO:0006508
Pvu6g1539 554 Gene3D Acid Proteases 78 288 IPR021109 -
Pvu6g1539 554 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Pvu6g1539 554 PRINTS Pepsin (A1) aspartic protease family signature 282 295 IPR001461 GO:0004190|GO:0006508
Pvu6g1539 554 PRINTS Pepsin (A1) aspartic protease family signature 332 343 IPR001461 GO:0004190|GO:0006508
Pvu6g1539 554 PRINTS Pepsin (A1) aspartic protease family signature 527 542 IPR001461 GO:0004190|GO:0006508
Pvu6g1539 554 Gene3D - 360 463 - -
Pvu6g1539 554 ProSiteProfiles Saposin B type domain profile. 360 400 IPR008139 -
Pvu6g1539 554 SUPERFAMILY Acid proteases 64 553 IPR021109 -
Pvu6g1539 554 Pfam Saposin-like type B, region 2 363 396 IPR008138 -
Pvu6g1539 554 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 332 343 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g1539 Pvu-Chr6 26105551 26110829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g1539 K08245 - gmx:100801598 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g1539 6 26105551 26110829 Pvu6g1539 6 26105551 26110829 ECH
Pvu6g1539 6 26105551 26110829 Pvu3g0840 3 13018069 13022677 ECH
Pvu3g0841 3 13024178 13025564 Pvu6g1539 6 26105551 26110829 PCT