Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0840 ACTGCTGCTGCTATTCAATATGGTACGGGCGCAATTTCTGGTTTCTTTAGCTATGACAGTGTTAGAGTTGGTGACATAGTTGTAAAGAGCCAGGAATTTATCGAAGCAACTAGGGAGCCGGGTGTTGTATTTTTGGCAGCCAAGTTCGATGGTATACTGGGACTTGGATTTCAAGAGATATCTGTTGGAAATGCTGTTCCAGTGTGGTACAACATGGTTGAACAAGGTCTTATTAAGGAACCAGTATTTTCATTTTGGTTCAACCGCAAACCAGAGGAAGAGGAAGGGGGTGAGATTGTTTTTGGGGGTGTTGACCCTGCTCACTATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAGGGATATTGGCAGTTTGATATGGGAGATGTACTTATTGGTGGTAAACCCACTGGATATTGTGCTGATGGCTGTTCAGCCATTGCAGACTCAGGGACTTCCTTATTGGCCGGTCCAACGACTATAATAACTATGATAAACCATGCAATTGGAGCAGCTGGAATTATGAGCCAAGAGTGTAAGACCGTTGTTGCAGAGTATGGACAAACAATTTTGAATTTGCTTTTGGCTGAAACACAGCCAAAGAAGATCTGTTCTCAAATTGGATTGTGCACCTTTGATGGGACTCGTGGTATTGATATGGGGATAGCGAGCGTTGTGGATGAGATTGCAAGAAAATCATCTGGTGGTCTTCATGATGCTGCTTGTTCTGCGTGTGAGATGGCGGTTGTTTGGATGCAGAACCAGCTGAGCCGAAATCAGACACAGGATCAGATACTAAGCTACATCAATCAGCTTTGCGATAAAATGCCTAGCCCAATGGGAGAATCTTCTATTGACTGTGGGAATATCTCCTCATTACCTGTGGTGTCCTTTACTATCGGTGGAAGAACATTTGACCTGCTCCCAGAGGAGTACATACTCAAGGTGGGTGAAGGCCCTGTGGCTCAGTGCATTAGTGGCTTTACTGCTATAGATATTCCACCTCCTCGTGGCCCTCTCTGGATCCTTGGTGACGTCTTCATGGGGCGTTATCACACAGTGTTTGATTTTGGTAATCTTAGAGTGGGATTTGCTGATGCAGCTTAA 1110 0.4486 TAAAIQYGTGAISGFFSYDSVRVGDIVVKSQEFIEATREPGVVFLAAKFDGILGLGFQEISVGNAVPVWYNMVEQGLIKEPVFSFWFNRKPEEEEGGEIVFGGVDPAHYKGKHTYVPVTRKGYWQFDMGDVLIGGKPTGYCADGCSAIADSGTSLLAGPTTIITMINHAIGAAGIMSQECKTVVAEYGQTILNLLLAETQPKKICSQIGLCTFDGTRGIDMGIASVVDEIARKSSGGLHDAACSACEMAVVWMQNQLSRNQTQDQILSYINQLCDKMPSPMGESSIDCGNISSLPVVSFTIGGRTFDLLPEEYILKVGEGPVAQCISGFTAIDIPPPRGPLWILGDVFMGRYHTVFDFGNLRVGFADAA* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0840 369 PRINTS Pepsin (A1) aspartic protease family signature 97 110 IPR001461 GO:0004190|GO:0006508
Pvu3g0840 369 PRINTS Pepsin (A1) aspartic protease family signature 147 158 IPR001461 GO:0004190|GO:0006508
Pvu3g0840 369 PRINTS Pepsin (A1) aspartic protease family signature 342 357 IPR001461 GO:0004190|GO:0006508
Pvu3g0840 369 Gene3D Acid Proteases 1 103 IPR021109 -
Pvu3g0840 369 Pfam Eukaryotic aspartyl protease 3 367 IPR033121 -
Pvu3g0840 369 Gene3D - 175 278 - -
Pvu3g0840 369 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 1 369 - -
Pvu3g0840 369 Gene3D Acid Proteases 104 369 IPR021109 -
Pvu3g0840 369 Pfam Saposin-like type B, region 2 178 211 IPR008138 -
Pvu3g0840 369 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 1 369 IPR001461 GO:0004190|GO:0006508
Pvu3g0840 369 ProSiteProfiles Saposin B type domain profile. 239 280 IPR008139 -
Pvu3g0840 369 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 147 158 IPR001969 GO:0004190|GO:0006508
Pvu3g0840 369 ProSiteProfiles Saposin B type domain profile. 175 215 IPR008139 -
Pvu3g0840 369 SUPERFAMILY Acid proteases 4 368 IPR021109 -
Pvu3g0840 369 Pfam Saposin-like type B, region 1 242 278 IPR007856 GO:0006629
Pvu3g0840 369 ProSiteProfiles Peptidase family A1 domain profile. 1 366 IPR033121 -
Pvu3g0840 369 SUPERFAMILY Saposin 176 278 IPR011001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0840 Pvu-Chr3 13018069 13022677 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0840 K08245 - gmx:100779619 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0840 3 13018069 13022677 Pvu3g0840 3 13018069 13022677 ECH
Pvu6g1539 6 26105551 26110829 Pvu3g0840 3 13018069 13022677 ECH