Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1720 ATGAAACCTATAGAAATGGAGAGCAAGGCACCGATAGTAGCCAAGAAAGTGTGGGACATGGCACGTGTCATGTTCTTCATGATGAGAAAAGGCATATTCAAGGGCAAGCTCATCATGGACCTCAATGTCATGCTAAAGCGCCGCAGCAAGCTCGCCGGAAAAGCCATTGCAAACCTAATGTCCCACCACCACCACCACCACCACGGCGCCTCCCACGACTCGCACGCTCAGTTCTCCGCCCCGAGGGAGTACGAGTTCAGCTGCAGCAACACGCCCAACGCCTTCTCCTTCCCAGCAATCGGCAAGCGCCACCGCCACTTCTTCGCCTGCGTCCACGCGCCCCCCACGCAGGACGACGACGCCGTGACGGTTAACGCCGTGAAGGCGGTGCTGGAGATGCTGAACAACGACGTTAAGGTCGAGACGGCCGCGTCCCCTGCGCTGCCAGGGTTCGGGCCGAGCCCCATGGTGCGGCAACTGAGGGTGACGGACTCGCCGTTCCCTCTGCGAGATTCCGACCAAGACAACGACCACCAGGTGGATAAGGCGGCGGAAGAGTTCATCAAGAGGTTTTACAAGGAGTTGAAGAAACAGGATTAG 600 0.5833 MKPIEMESKAPIVAKKVWDMARVMFFMMRKGIFKGKLIMDLNVMLKRRSKLAGKAIANLMSHHHHHHHGASHDSHAQFSAPREYEFSCSNTPNAFSFPAIGKRHRHFFACVHAPPTQDDDAVTVNAVKAVLEMLNNDVKVETAASPALPGFGPSPMVRQLRVTDSPFPLRDSDQDNDHQVDKAAEEFIKRFYKELKKQD* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1720 199 Pfam Cotton fibre expressed protein 178 198 IPR008480 -
Pvu5g1720 199 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 6 198 - -
Pvu5g1720 199 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 6 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1720 Pvu-Chr5 39169772 39170692 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1720 - - gsj:114386903 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1517 10 41728560 41729341 Pvu5g1720 5 39169772 39170692 ECH
Pvu2g3185 2 47130193 47131520 Pvu5g1720 5 39169772 39170692 ECH
Pvu4g1799 4 45191505 45192407 Pvu5g1720 5 39169772 39170692 ECH
Pvu5g1720 5 39169772 39170692 Pvu5g1720 5 39169772 39170692 ECH
Pvu5g1720 5 39169772 39170692 Pvu10g1517 10 41728560 41729341 PCT